Gene PXO_03550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_03550 
Symbol 
ID6308592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand+ 
Start bp5177552 
End bp5178196 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content67% 
IMG OID642642305 
Productpeptidase, S54 (rhomboid) family 
Protein accessionYP_001916130 
Protein GI188579201 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCGCTGC TGTTCGCGAC GGTGTGGCTG GCCTATCTGT GGTCGATCAG CCGGCCGGGC 
GAGGCGCGCA ATACGCTGTG GCTCGACTGG GGCGCGCTCT CCAGCGGCGT TTCCAATCTG 
GGCGACTGGT GGGCGACCTT GCGCGACGGC AGCGTGCTGC GTCTGTTCAC TGCGCTGTTC 
CTGCATGCCG ACTGGTCGCA TCTGCTCGGC AACCTGATGT TTTTGCTGAT CTTCGGGTTG 
CCGGCCGAGC GCATCCTGGG CCCGTGGCGG TTATTGCTGC TGTTTCTGGT TGGCGGCGCG 
GCCTCCAACC TGGCGGCGAT CTTTGCCATC GGTACGCCGG ACCGGGTGAT CATCGGCGCC 
TCGGGTGCGG TGTCGGCATT GATCGGCACG TATCTGGCGC TGTTTCCGGG CGCCAAGCTG 
GGCGTGGTGC TGCCGCTGGG CGTCTTCCTC GAATTCATCC GCGTGCCGGC GCCATTGTTG 
ATCGGCGCCT GGGCGCTGTT GCAGGTGGTG TTCGCCTATA TCGGCCCGGC CTTCGGCATG 
GTGGCGTGGT CGGCGCATAT CGCCGGCTTT GTGTTCGGCA TCGTGTACGG CTTGTCCGTG 
CGCGCGGCGA TCGCGCGGCG GCTGCGCAAG CGCCACGGCT TCTGA
 
Protein sequence
MPLLFATVWL AYLWSISRPG EARNTLWLDW GALSSGVSNL GDWWATLRDG SVLRLFTALF 
LHADWSHLLG NLMFLLIFGL PAERILGPWR LLLLFLVGGA ASNLAAIFAI GTPDRVIIGA 
SGAVSALIGT YLALFPGAKL GVVLPLGVFL EFIRVPAPLL IGAWALLQVV FAYIGPAFGM 
VAWSAHIAGF VFGIVYGLSV RAAIARRLRK RHGF