Gene PXO_03393 details

Gene Information

• Locus tag: PXO_03393
• Symbol: hrpA1
• ID: 6303609
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 80392
• End bp: 82167
• Gene Length: 1776 bp
• Protein Length: 591 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642637403
• Product: HrpA type III secretion outer membrane pore, YscC/HrcC family
• Protein accession: YP_001911288
• Protein GI: 188574359
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTTCGCCG TACTGCTGCT CAGCCTGCTG CCGCTGTTCT CGCCACAGGC CGACGCCGCC 
CAGGTCCCGT GGCATTCGCG CACGTTCAAA TACGTCGCCG ACAACAAGGA TCTCAAAGAA 
GTGCTGCGTG ATTTGTCCGC CAGCCAGTCC ATCGCCACCT GGATCTCGCC AGAGGTGACC 
GGCACGCTGA GCGGCAAATT TGAAACCTCC CCGCAGAAAT TCCTCGACGA TCTGGCGGCC 
ACCTACGGCT TTGTCTGGTA CTACGACGGC GCCATGCTCA GGATCTGGGG TGCAAACGAA 
TCCAAGAGCG CGACCTTGAG TCTGGGGACT GCATCGACCA AGTCACTGCG CGACGCACTG 
GCGCGCATGC GCCTGGACGA TTCGCGCTTT CCGGTGCGTT ACGACGAGGC CGCGCATGTG 
GCGGTGGTCT CCGGACCGCC AGGGTATGTG GATACCGTTT CGGCCATTGC CAAGCAGGTC 
GAGCAGGGCG CCCGTCAGCG CGATGCCACC GAAGTGCAGG TGTTTCAGCT GCATTATGCG 
CAAGCGGCCG ACCACACGAC ACGCATCGGC GGTCAGGACG TGCAGATTCC AGGCATGGCC 
AGTCTGTTGC GCAGCATATA CGGCGCACGC GGCGCGTCGG TTGCGCCGAT AGCCGCGTTT 
GGCGCCAACT TTGGCCGGGT ACAGCCGATC GGCGGTGGGT CCTCCAACAC ATTTGGCAAT 
GCCGCACAGG GTCAAGGTGG CGGAGCCAGT GGCACCCTTG GGCTGCCTTC GGCCTGGTTC 
GGCGGGGCCT CGCCGTCCGA TCGCATGCCG GTCAGCCCGC CGTTGCCCGG CAGCGGAGCT 
GCTGCGGGGT CGCCGGCCAG CGTATGGCCG GAGCTCAGCA AGGGACGGCG CGATGAATCC 
AATCCGATCG ACGCCGGTGG TGGCGCAGAG CTGGCCTCAG ATGCGCCGGT GATCGAAGCC 
GATCCGCGCA CGAACGCCAT CCTGATCCGC GATCGACCGG AGCGGATGCA GAGCTATGGC 
ACCCTGATCC AACAGCTGGA CAACCGGCCC AAGTTGCTGC AGATCGATGC CACCATCATC 
GAGATCCGCG ATGGCGCAAT GCAGGATCTC GGTGTCGATT GGCGCTTCCA CAGCCAGCAC 
ACCGACATAC AGACCGGCGA CGGCCGTGGC GGTCAGTTGG GTTTCAACGG CGTATTGAGC 
GGCGCTGCCA CCGATGGCGC GACCACGCCG GTTGGCGGCA CCTTGACGGC CGTGTTGGGA 
GATGCCGGAC GTTATCTGAT GACGCGCGTG TCGGCGTTGG AGACGACGAA CAAGGCAAAG 
ATCGTGTCTT CGCCCCAGGT TGCGACGCTG GACAACGTCG AAGCGGTCAT GGACCACAAG 
CAACAGGCAT TCGTCCGGGT CAGTGGATAC GCATCAGCCG ATCTTTATAA CCTCTCCGCC 
GGGGTGTCGT TGCGGGTATT GCCCAGCGTG GTGCCAGGCT CGCCGAACGG TCAGATGCGT 
CTGGATGTGC GTATTGAGGA TGGCCAGCTC GGATCCAACA CCGTGGACGG CATTCCGGTC 
ATTACCTCCA GCGAGATCAA GACCCAGGCT TTCGTCAATG AAGGCCAAAG TCTGCTGATT 
GCAGGATACG CCTACGATGC CGACGAGACC GATCTGAATG CGGTACCGGG TCTGTCAAAG 
ATTCCGTTGC TCGGTAATCT GTTCAAGCAC CGCCAAAAAA GCGGGTCACG CATGCAACGG 
CTGTTTCTGT TGACCCCACA TGTGGTGTCG CCCTGA 

 

Protein sequence

MFAVLLLSLL PLFSPQADAA QVPWHSRTFK YVADNKDLKE VLRDLSASQS IATWISPEVT 
GTLSGKFETS PQKFLDDLAA TYGFVWYYDG AMLRIWGANE SKSATLSLGT ASTKSLRDAL 
ARMRLDDSRF PVRYDEAAHV AVVSGPPGYV DTVSAIAKQV EQGARQRDAT EVQVFQLHYA 
QAADHTTRIG GQDVQIPGMA SLLRSIYGAR GASVAPIAAF GANFGRVQPI GGGSSNTFGN 
AAQGQGGGAS GTLGLPSAWF GGASPSDRMP VSPPLPGSGA AAGSPASVWP ELSKGRRDES 
NPIDAGGGAE LASDAPVIEA DPRTNAILIR DRPERMQSYG TLIQQLDNRP KLLQIDATII 
EIRDGAMQDL GVDWRFHSQH TDIQTGDGRG GQLGFNGVLS GAATDGATTP VGGTLTAVLG 
DAGRYLMTRV SALETTNKAK IVSSPQVATL DNVEAVMDHK QQAFVRVSGY ASADLYNLSA 
GVSLRVLPSV VPGSPNGQMR LDVRIEDGQL GSNTVDGIPV ITSSEIKTQA FVNEGQSLLI 
AGYAYDADET DLNAVPGLSK IPLLGNLFKH RQKSGSRMQR LFLLTPHVVS P