Gene PXO_03171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_03171 
SymbolrfbC 
ID6308011 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand- 
Start bp4625624 
End bp4626181 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content60% 
IMG OID642641738 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001915575 
Protein GI188578646 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.606681 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAAATCG TCGAAACGCG TTTACCAGGT TGTGTCGTCA TCGAGCCGGC AGTGTTCGGC 
GATGAGCGCG GATATTTCTT CGAAACGTGG AATGCCGAGC GCTTCGGGCA ACATGGTCTG 
CCGACGCAGT TCTTGCAGAG CAATGTCTCC ACCTCGGCCA AAGGCGTGTT GCGTGGTTTG 
CATTACCAGT GGCCGCGTCC TCAGGGCAAG CTGGTCAGCG TGCTGGAGGG TGAGGTCTAC 
GATGTGGCGG TCGACGTGCG CCACGGCTCG CCCAACTTCG GGCAGTGGGC GGCAGTAGTG 
TTGAGCGCAG AAAACAAGAA GCAGTTCTGG ATACCGGAAG GGTTTGCGCA CGGCTTTGCA 
GTGCTGTCGG AGCGAGCCGT GTTCAGTTAC CTGTGCACCG ACGTGTATGT GAAGGAGGCC 
GATGCCGGCG TGCGCTGGGA TGATGCGGCG ATCGGTATCG ATTGGCCGAT CAGCAATCCA 
TTGCTCTCTG CAAAGGACGC CGCTGCGCCG TTTCTGGCCG ATGTGCCCGC TGAGCGCTTG 
CCGGTGTATA AACCGTGA
 
Protein sequence
MKIVETRLPG CVVIEPAVFG DERGYFFETW NAERFGQHGL PTQFLQSNVS TSAKGVLRGL 
HYQWPRPQGK LVSVLEGEVY DVAVDVRHGS PNFGQWAAVV LSAENKKQFW IPEGFAHGFA 
VLSERAVFSY LCTDVYVKEA DAGVRWDDAA IGIDWPISNP LLSAKDAAAP FLADVPAERL 
PVYKP