Gene PXO_03103 details

Gene Information

• Locus tag: PXO_03103
• Symbol: lpdA
• ID: 6308087
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: -
• Start bp: 4690749
• End bp: 4692572
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 642641813
• Product: dihydrolipoamide dehydrogenase
• Protein accession: YP_001915650
• Protein GI: 188578721
• COG category: [C] Energy production and conversion
• COG ID: [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
• TIGRFAM ID: [TIGR01350] dihydrolipoamide dehydrogenase

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGGTCA TTGAAATCAA GGTTCCCGAC ATCGGCGATT ACAGCGATGT CCCCGTCATC 
GAAGTGCTGG TCGCCGTTGG CGACAGCGTG GCCAAGGACC AGGGCCTGGT AACGCTGGAA 
TCGGACAAGG CCACGCTGGA AGTGCCGTCC TCGGCCGCGG GTGTTGTCAA GGAACTCAAG 
GTCAAGGTCG GCGACATCTT GTCCGAAGGC GCGCTCGTGC TGCTGCTCGA AACCGAAGGC 
GAGGCTGCCG CGCCGGCCAA GGCCGAGACC AAGGCCGCAC CGGCCGCTGT CGCGCCTGCT 
GCCGCGCCGG GCAGCAAGCC GCCGGTGACG CCGTCGCATC GCGCCCCGGC CGAACCGGCG 
CCGTCCAAGC CCGCACTGGC CAGCGACAAG CCGGCCGATA TCGCATGCAA GATGGTGGTG 
CTCGGCGCCG GCCCCGGTGG CTACACGGCC GCATTCCGCG CCGCCGATCT GGGCCTGGAC 
ACGGTGCTGA TCGAGCGCTA CGCCAGCCTC GGCGGCGTCT GCCTCAACGT TGGCTGCATC 
CCGTCCAAGG CGCTGCTGCA TGCCGCCGCG GTGATCGATG AAGTGGCCCA TGCCGGCGAC 
TTCGGCGTGG ACTTCGGTCA GCCCAAGATC ACCCTGGGCA CGCTGCGCGA GTACAAGGAA 
AAAGTGGTCG GCAAGCTCAC CGGCGGCCTG GCCAGCATGG CCAAGCAGCG CAAGGTACGT 
ACCGTCACCG GCGTGGCAAC GTTCGTTTCG CCCAATGAGC TGGAAATCGT CGGCGACGAC 
GGCAAGACCC AGCTGCTGCG CTTCGAGCAC TGCATCATCG CGGCCGGCTC GCAGGCGGTG 
AAGCTGCCCA ACTTCCCATG GGACGACAAG CGCGTGATGG ACTCCACCGA CGCGCTGGAG 
CTGCACGACA TTCCCAAGAC CCTGCTGGTG GTCGGCGGCG GCATCATCGG TCTGGAAATG 
GCCACGGTGT ACAGCGCGCT CGGCAGCAAG GTCACCGTGG TCGAATTCAT GGACCAGCTG 
ATGCCGGGCG CCGACAAGGA CCTGGTCAAG CCGCTGGCCG ACCGCCTGAA GAAGCAGGGC 
GTCGACGTCC ATCTCAAGAC CAAGGCCACC GACGTCACCG CCAGTAAAAA GGGCATCACC 
GTGTCCTTCG AAGCGGCCGT GGAGGGCGAC AAACCCGGCC TGCAGGCCAC TGCGTACGAC 
CGCGTGCTGG TCGCCGTGGG CCGCTCGCCC AACGGCAAGA AGATCGGTGC CGACAAGGCC 
GGCGTCACGG TCACCGAGCG TGGCTTCATT CCGGTCGACC GGCAGATGCG CACCAACGTG 
CCGCACATCT TCGCCATCGG CGACATCGTC GGTAACCCGA TGCTGGCGCA CAAGGCCACG 
CACGAAGGCA AGCTGGCCGC CGAAGTGGCT GCCGGCGAGA AGAAGGAATG GGTGGCGCGG 
GTGATCCCGT CGGTGGCGTA CACCAACCCG GAAATCGCCT GGGTCGGCGT GACCGAGACC 
GAAGCCAAGG CCAAGGGCCT GAAGGTCGGC GTGGCCAAGT TCCCGTGGGC TGCCAGTGGC 
CGCGCGATCG GTATCGGCCG CACCGAGGGC TTCACCAAGC TGATTTTCGA CGAAGAAACC 
CATCGCGTGA TCGGTGGCGC CATCGTCGGT GTGCATGCCG GCGATCTGCT GGCTGAAATT 
GGTCTGGCGA TCGAAATGGG TGCCGAGGCC GAAGACATCG GCCACACCAT CCATGCGCAT 
CCGACCCTGA GCGAATCGGT CGGCATGGCT GCCGAGGTGT ACGACGGCAC CATCACCGAC 
CTGTACATCC CCAAGAAAAA GTGA 

 

Protein sequence

MAVIEIKVPD IGDYSDVPVI EVLVAVGDSV AKDQGLVTLE SDKATLEVPS SAAGVVKELK 
VKVGDILSEG ALVLLLETEG EAAAPAKAET KAAPAAVAPA AAPGSKPPVT PSHRAPAEPA 
PSKPALASDK PADIACKMVV LGAGPGGYTA AFRAADLGLD TVLIERYASL GGVCLNVGCI 
PSKALLHAAA VIDEVAHAGD FGVDFGQPKI TLGTLREYKE KVVGKLTGGL ASMAKQRKVR 
TVTGVATFVS PNELEIVGDD GKTQLLRFEH CIIAAGSQAV KLPNFPWDDK RVMDSTDALE 
LHDIPKTLLV VGGGIIGLEM ATVYSALGSK VTVVEFMDQL MPGADKDLVK PLADRLKKQG 
VDVHLKTKAT DVTASKKGIT VSFEAAVEGD KPGLQATAYD RVLVAVGRSP NGKKIGADKA 
GVTVTERGFI PVDRQMRTNV PHIFAIGDIV GNPMLAHKAT HEGKLAAEVA AGEKKEWVAR 
VIPSVAYTNP EIAWVGVTET EAKAKGLKVG VAKFPWAASG RAIGIGRTEG FTKLIFDEET 
HRVIGGAIVG VHAGDLLAEI GLAIEMGAEA EDIGHTIHAH PTLSESVGMA AEVYDGTITD 
LYIPKKK