| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02961 |
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| Symbol | yccS |
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| ID | 6308226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 4836839 |
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| End bp | 4839052 |
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| Gene Length | 2214 bp |
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| Protein Length | 737 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642641950 |
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| Product | hypothetical membrane protein |
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| Protein accession | YP_001915787 |
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| Protein GI | 188578858 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1289] Predicted membrane protein |
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| TIGRFAM ID | [TIGR01666] hypothetical membrane protein, TIGR01666
[TIGR01667] integral membrane protein, YccS/YhfK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCACTC CCTCCTTCGA AACCCGCTTA AGCCGCCTGT GGGCCCATGA AAAAGCCAGC
TATGGTCTGC GTGTGTTCAT CGCGCTGGCG GTGGCGATGG GCGTGTGCTG GCACTGGCAG
CAACTCACCG CGGTACCGGC GCTGTTCCTC GGCGCGATCG CCAGCGCCAT CGCCGAGACC
GACGACAACT GGCTGGGCCG CATCAAATCG GTACTGCTCT CGCTGCTGTG TTTTGCCGCC
GCTGCGACTG CGGTGGTGCT GCTGTTTCCG TATCCGCTGC CGTTCGTGAT CGGCATGGCG
TTGGCGACTT TTTCGTTGAC CCTGCTCGGC GCACTGGGCG AGCGCTATGC CTCCATCTCG
CAGGCCACGG TGGCCTTGTC GATCTACGCC ATGATCGGCA TGGACCAGCA CGGCAGCCAC
CATCCGTCGA TCGCCTGGCA CGGCGCGGCG CTGCTGCTGA TCGGGGCCAC CTGGTACGGC
GTGCTGTCGA TCCTGTGGAC CATCCTGTTC GCCAATCGTC CGGTCCGCGA GCGGCTGTCG
CGGCTGTTTT TCGAGTTGGG CCGCTACCTC AAGCTCAAGG CCGATCTGTT CGAACCGGTG
CGGCAGAGCG ACCTGCATGT ACGCCGGCTG GCGTTGGCCG AGCAGAACGC CAAGGTGGTC
GGCGCGCTCA ATGCGGCCAA GACCGCGATC ATGAGCCGCT TCGGCCGCTC GGGGCGGCCG
GGCGTGCAAT CCGGCCTGTA TTTCCGGCTG TATTACATGG CGCAGGAATT CCATGAGCGC
GCCAGTTCCT CGCACTATCC GTACGAAGCC CTGACCGACG CGTTCTTCCA CAGCGATGTG
CTGTATCGCT GCCAGCGCCT GCTCGCGTTG CAAGGCAAGG CGTGCGCGGC ACTGGGCGAG
GCGATCCGCC TGCGCCATCC GTTCGATTAT GGCGACAACA GCCGCCTGGC CACCGAAGAC
CTGCGCCAAT CGCTGGATTA TCTGCACGCA CGTGCCGACC CCGCATTGAC GCGGCTGCTC
GGCGCGCTGG AGTTGCTGGT GACCAACCTG CAGAGCATCG AGCGCAGGTT GTCGGAAGCG
GCGCAATCCG ATTCCACCAG CGACAACCTC GACACCCGGC TGCGCGATTC CTCGCCGCAT
ACCTTGCGCG AAATGGGCGC CCGGCTGGTG CAGCAACTCA CGCCCGGCTC GGTGCTGTTC
CGCCACGGCC TGCGCATGGC CATCGCGCTG CTGGTCGGCT ACGCCATCAT GCAATCCATC
CATGCCGACA ACGGGTACTG GATCCTGCTC ACCACTGCGT TCGTCTGCCG GCCCAATTAC
GGTGCCACGC GCTTGCGGCT GGTGCAGCGC ATCGCCGGCA CCTTGATCGG CCTGGTCGCC
ACCTGGGCGC TGATGCAACT ATTTCCCGGT ACCGAAGTGC AATTGCTGCT GGCGTTGGCC
GCTGCACTGG TGTTCTTCAT CACCCGTACC GATCGCTACA TGCTGGCCAC CGCCGGCATC
ACGGTGATGG CGCTGTTCTG CTTCAACCTG CTCGGCAATG GCTTCGTGCT GATCTGGCCG
CGTCTGATCG ACACGCTGAT CGGCTGCGCG ATCGCCGCCG CTGCCTCGTT CCTGATCCTG
CCGGACTGGC AGGGCCGCCG TCTCAACCAG GTGATGGCCA CGGTGCTGAC CAGTTGCGCG
CGTTATCTCA CCCAGGTGCT GGAGCAATAC GCCAGCGGCA TGCGCGACGA TCTGCCCTAC
CGCATCGCGC GCCGCGACAT GCACAACGCC GATGCCGCAT TGTCGGTGGC GTTATCCAAC
ATGCTGCGCG AACCCGGCCG TTATCGGCGC AATCTGGATG CGGGGTTTCG CTTCCTGGCG
CTGTCCAACA CCTTGCTCGG CTATCTGTCG GCACTGGGCG CGCATCGCGC CGCGCTGGAG
GGCGAACACG ACGCCGCCAT CGCGCAGGCC GGCGAGTACC TGCAGCGCGC GCTGAGCGAG
ATCGCCAGCG CCGTTGGCCA ACGCCAGCCG CTGCCGGTGC ACGACGAAAG CGAAGAACTC
GCCACCGCCG AAGCGCTGGA ACAACACGCC GTGCAGTTGC CACCCAAACA ACGCCTGGTG
CGCGACCAGC TGGCGTTGAC GCTGCGCCTG CTGCCCAAAC TGCGTGCTGC AGCGTTGGCG
GTGACCACGG CACCGGCGGA GAATCCGCCG CGTGTGGCGA TCCACAAAGC CTAG
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| Protein sequence | MATPSFETRL SRLWAHEKAS YGLRVFIALA VAMGVCWHWQ QLTAVPALFL GAIASAIAET
DDNWLGRIKS VLLSLLCFAA AATAVVLLFP YPLPFVIGMA LATFSLTLLG ALGERYASIS
QATVALSIYA MIGMDQHGSH HPSIAWHGAA LLLIGATWYG VLSILWTILF ANRPVRERLS
RLFFELGRYL KLKADLFEPV RQSDLHVRRL ALAEQNAKVV GALNAAKTAI MSRFGRSGRP
GVQSGLYFRL YYMAQEFHER ASSSHYPYEA LTDAFFHSDV LYRCQRLLAL QGKACAALGE
AIRLRHPFDY GDNSRLATED LRQSLDYLHA RADPALTRLL GALELLVTNL QSIERRLSEA
AQSDSTSDNL DTRLRDSSPH TLREMGARLV QQLTPGSVLF RHGLRMAIAL LVGYAIMQSI
HADNGYWILL TTAFVCRPNY GATRLRLVQR IAGTLIGLVA TWALMQLFPG TEVQLLLALA
AALVFFITRT DRYMLATAGI TVMALFCFNL LGNGFVLIWP RLIDTLIGCA IAAAASFLIL
PDWQGRRLNQ VMATVLTSCA RYLTQVLEQY ASGMRDDLPY RIARRDMHNA DAALSVALSN
MLREPGRYRR NLDAGFRFLA LSNTLLGYLS ALGAHRAALE GEHDAAIAQA GEYLQRALSE
IASAVGQRQP LPVHDESEEL ATAEALEQHA VQLPPKQRLV RDQLALTLRL LPKLRAAALA
VTTAPAENPP RVAIHKA
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