| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02718 |
|---|
| Symbol | prpB |
|---|
| ID | 6307913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 4515632 |
|---|
| End bp | 4516528 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642641642 |
|---|
| Product | 2-methylisocitrate lyase |
|---|
| Protein accession | YP_001915480 |
|---|
| Protein GI | 188578551 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
|---|
| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCTT CGTCCCCCTC TTCGGCCGGC ACGCGCTTCC GCGCCGCGCT GGCTGCCGAA
TCGCCGCTGC AGGTGATCGG CGCGATCAAC GCCAACCATG CGCTGTTGGC TCAGCGCGCC
GGCTACCAGG CGATTTACCT GTCTGGCGGC GGCGTGGCGG CCGGGTCGCT GGGGTTGCCG
GACCTGGGCA TCAACACGCT GGAAGACGTG CTGATCGACG TCCGCCGTAT CACCGACGTG
TGCGAGCTGC CGCTGCTGGT GGACGTGGAC ACCGGCTTCG GGCCGAGCGC GTTCAACATC
GAGCGCACCA TCAAATCGCT GATCAAGGCG GGCGCGGGCG GTTGCCATAT CGAAGACCAG
GTGGGCGCCA AGCGCTGCGG CCACCGGCCG GGCAAGGAGA TCGTGAGCCA GGGTGAGATG
GTGGACCGGG TCAAGGCGGC AGCCGATGCC AAGACCGACG CGGCGTTCTT CCTGATCGCC
CGCACCGACG CGATCCAGAT GGAAGGCGTG GATGCGGCGA TCGAACGCGC CATCGCCTGC
GTGGAAGCGG GTGCGGATGG CATCTTCGCC GAGGCCGCCT ACGACCTGGA AACCTACAAG
CGTTTTGTCG ATGCGGTCAA CGTGCCGGTG CTGGCCAACA TCACCGAGTT CGGCAAGACC
CCGCTGTTTA CGCGCGACCA GCTGGCGCAG GCCGGCGTGG CGATTCAGTT GTTTCCGCTG
TCGGCGTTTC GTGCCGCCAA CAAGGCCGCT GAGGCGGTTT ACACGGCGAT CCGTCGCGAA
GGTCATCAAC AAGCCGTGCT GGACAGCATG CAGACGCGCG AAGAGCTGTA CGAACGCATC
GGTTACCACG ACTACGAGCA GCGCCTGGAT GCGTTGTTCG CGCGCAAAGG CGCATGA
|
|---|
| Protein sequence | MTPSSPSSAG TRFRAALAAE SPLQVIGAIN ANHALLAQRA GYQAIYLSGG GVAAGSLGLP
DLGINTLEDV LIDVRRITDV CELPLLVDVD TGFGPSAFNI ERTIKSLIKA GAGGCHIEDQ
VGAKRCGHRP GKEIVSQGEM VDRVKAAADA KTDAAFFLIA RTDAIQMEGV DAAIERAIAC
VEAGADGIFA EAAYDLETYK RFVDAVNVPV LANITEFGKT PLFTRDQLAQ AGVAIQLFPL
SAFRAANKAA EAVYTAIRRE GHQQAVLDSM QTREELYERI GYHDYEQRLD ALFARKGA
|
|---|
| |