| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02621 |
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| Symbol | raxC |
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| ID | 6307867 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 4470839 |
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| End bp | 4472170 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642641598 |
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| Product | outer membrane protein required for AvrXa21 activity C (raxC) |
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| Protein accession | YP_001915436 |
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| Protein GI | 188578507 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGCGA ACGCCACCGA CCTGCTGCAG GTCTACGAAA TGGCGCGCAA CGGTGATCCG
CAGCTGGCCG TGGCCGAGTC CACGCGCCTG GTGAATCGGG AAGGTCAGGT ACAGGCGCGT
GCGGCGTTGC TGCCGCAGCT GGACGGCAGC GCCGGATACA CCCAGTCGCA TCGTGAGCTG
GAGGGCGTCG GACGCCCCAC GACCAAACAG CGCCAGTACG CGATTCAGGG TAGCCAGACC
ATTTTCAATT GGGCGCAGTT CTCTAACCTG CGCGCGCAGC GCGAAGTGAC CAGGGCTGCA
GATTTCACTT TGGCATCGGC CAACAACGAT CTGATGACGC GTACCTCGGC GGCGTATTTC
CAGGTACTGG TGGGGATCGA GTCGCTGGCG GCAGCCGAGA CCAACGAAGC GGCAGCAAAG
AAGCAATTCG ACTACGCCGA CAAGCGTCTG GAAGTGGGCC TGGCACCGAT CACCGACGTG
CACGAAGCCC GCGCTCAGTA CGACCAGGCG CGCGCCGACA CCATCAACGC CCGCAACACG
TTGAAGGATT ACTACCAGGC ACTGACTGAA CTCACCGGCC AGCCCGTAGT TGGTTTGCGT
GCATTGCCCG ACGAGTTCCG CCCGGAAGTG CCGGCCGCTT ATAGCAATGT CGATCAGTTG
GTCGCTACCG CCATTGCCGA TAATCCCGCG TTGAGGGCGC AGCAGTTGCA GGTCAGTGCC
GCCGAGGCAC ACGTCAGTGC TGCGCGTGCC GGCCATCTGC CGACCCTCAA TCTTTCCGGC
AGCATGGGAC GGACCAATAG CTGGGGCGGT GGCAGCGATG TCGATACAGC TGCCGGCAAT
TTCATGACCA ATAATGGCAA TATCGATACC AATTCCATCG GCATCACCCT ATCGATTCCG
ATCTTCTCGG GTGGTGCGAC CCAGTCGGCC GTGCGTCAGG CCCTGTCGCA GCGCGACATC
CAGCAGGACA TCTACGAGCA GCAGAAGCGC GCGCTGGATC GCAACACGCG CAATGCCTAC
CAGACCGTGG TTGCCGGCAT CAGCGAAGTG GAAGCCCGCC GTCTGGCCGT GGTGTCGGCG
CAAGCCGCCT ACGACGCCTC GCAGGTGGGC CTGGAAGTCG GTACGCGTAC CGTGCTGGAT
GTCGTGCAGA ACCAGCGCAC GCTGTTCCAG GCGCAGCTGA ACTACGCGCA GTCGCGTTAC
ACCTTCCTGC AGAACCGACT GCTGCTTGGT CAAGCCATCG GCAAGCTCGA CATCACCGAC
TTGCAGGATG TGAATCGCCT GCTGTCGCAG GATGCCGAGT CCAAGCTGCA GGGCAGTGGT
TCGTTGCAGT AA
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| Protein sequence | MAANATDLLQ VYEMARNGDP QLAVAESTRL VNREGQVQAR AALLPQLDGS AGYTQSHREL
EGVGRPTTKQ RQYAIQGSQT IFNWAQFSNL RAQREVTRAA DFTLASANND LMTRTSAAYF
QVLVGIESLA AAETNEAAAK KQFDYADKRL EVGLAPITDV HEARAQYDQA RADTINARNT
LKDYYQALTE LTGQPVVGLR ALPDEFRPEV PAAYSNVDQL VATAIADNPA LRAQQLQVSA
AEAHVSAARA GHLPTLNLSG SMGRTNSWGG GSDVDTAAGN FMTNNGNIDT NSIGITLSIP
IFSGGATQSA VRQALSQRDI QQDIYEQQKR ALDRNTRNAY QTVVAGISEV EARRLAVVSA
QAAYDASQVG LEVGTRTVLD VVQNQRTLFQ AQLNYAQSRY TFLQNRLLLG QAIGKLDITD
LQDVNRLLSQ DAESKLQGSG SLQ
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