Gene PXO_02547 details

Gene Information

• Locus tag: PXO_02547
• Symbol: typA
• ID: 6307793
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 4398237
• End bp: 4400066
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642641527
• Product: GTP-binding protein TypA
• Protein accession: YP_001915365
• Protein GI: 188578436
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.404241
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTATCG AAAAACTCCG CAATATCGCC ATCGTCGCGC ACGTCGACCA TGGCAAGACC 
ACTCTCGTCG ACTGCCTGCT GAAGCAGTCC GGCACCCTGT CCGAACGCAC CGTGTTGGCT 
GAGCGCGTGA TGGACAGCAA CGATCAGGAA AAGGAACGTG GCATCACGAT CCTGGCCAAG 
AACACCGCCA TCACCTGGAA CGGCAACCGC ATCAACATCG TCGACACCCC GGGACACGCC 
GACTTCGGTG GCGAAGTCGA GCGCGTGCTG TCGATGGTGG ACTCGGTGCT GATCTTGGTC 
GACGCGATGG ACGGCCCGAT GCCGCAGACC CGCTTCGTGA CCCAGAAAGC CTTCGCGATG 
GGCTTCAAGC CGATTGTGGT GGTCAACAAG ATCGACCGTC CCGGCGCACG TCCGGACTGG 
GTGATCGACC AGGTGTTCGA CCTGTTCGAC AAGCTCGGCG CAACCGACGA GCAGCTGGAC 
TTCCCGATCG TCTACACCTC CGCTTTGAAC GGCTACGCCA GCCTGGATTC GGACGTGCGC 
GACGGCGACA TGACCCCGCT GTACGAAGCG ATCATGCAGC ACGTGTCGGC CCCGGACGTT 
GACCCGGACG GCCCGTTCCA GATGCGCATC AGCCAGCTGG ACTACAACAA CTTCGTCGGT 
GTGATCGGCA TCGGCCGCAT CCAGCGCGGC GTGCTGAAGA AGAACATGCC GGTCAGCGTG 
ATCGACCGCG AAGGCAAGAA GCGTCAGGGC AAGGTGCTGC AGGTGCTGGG CTTCCTGGGC 
CTGGAGCGTA TCGAGCAGGA CACCGCCGAG GCCGGCGATA TCGTCGCCAT CTCCGGCGTG 
GCCGAGCTGA CCATTTCCGA CACCGTGTGC GCGCTCGACG CCCCGGAAGC GCTGCCGGCG 
CTGACCGTGG ACGAGCCGAC CATCTCGATG ACCTTCCAGG TCAACAACTC GCCGTTCGCC 
GGCAACAAGG ACCTGTCCGG TGGCAAATTC CTGACCAGCC GCCAGCTGCG CGACCGTCTG 
GAGCGCGAGA AGGTGCACAA CGTGGCGCTG AAGGTCGAGG AAGGCTCCGA CGCCGACAAG 
TTCCTGGTCT CCGGCCGTGG CGAACTGCAC CTGTCGGTGC TGATCGAAAA CATGCGTCGT 
GAAGGCTACG AGCTGGCCGT GTCGCGTCCG GAAGTGATCA TCAAGGAAAT CGACGGCAAG 
CTGATGGAGC CGATCGAACA GCTGGTGGTG GATATCGAAG AACAGCACCA GGGCGGCGTG 
ATGGAAAAGC TGGGCACCCG CAAGGGCCAG CTGAAGAACA TGGAGCCGGA CGGCAAGGGC 
CGTGTGCGTC TGGATTACAT GATCCCGGCG CGTGGCCTGA TCGGCTTCCA GAACGAATTC 
CGCACCCTGA CCCAGGGCTC GGGCCTGCTG TTCCACGTGT TCGACCATTA CGGTCCGAAG 
GAACAGGGCG CCATCGCCAA GCGCCAGAAC GGCGTGATGA TTGCCAACGC ACCGGGCGCA 
ACGCCGGCCT ATGCGCTGGG GCCGTTGGAA GAGCGTGGCC GCCTGTTCGC CGCCGAAGGC 
GACAACGTGT ACGAAGGCCA ACTGATCGGT ATCCATTCCA AGGACAACGA CCTGACCGTC 
AACGCGATCA AGACCAAGCC GCTGACCAAC ATGCGCGCTT CGGGCAAGGA CGATGCGATC 
AAGCTGACCC CGGCGATCAA GTACACGCTG GAACAGGCCC TGGACTTCAT CGAGGACGAC 
GAACTGGTTG AAGTCACCCC GAAGGAAATC CGCCTGCGCA AGAAGTTCCT GACAGAAAGC 
GACCGTAAGC GCGCTGGTCG TTCGGGCTAA 

 

Protein sequence

MSIEKLRNIA IVAHVDHGKT TLVDCLLKQS GTLSERTVLA ERVMDSNDQE KERGITILAK 
NTAITWNGNR INIVDTPGHA DFGGEVERVL SMVDSVLILV DAMDGPMPQT RFVTQKAFAM 
GFKPIVVVNK IDRPGARPDW VIDQVFDLFD KLGATDEQLD FPIVYTSALN GYASLDSDVR 
DGDMTPLYEA IMQHVSAPDV DPDGPFQMRI SQLDYNNFVG VIGIGRIQRG VLKKNMPVSV 
IDREGKKRQG KVLQVLGFLG LERIEQDTAE AGDIVAISGV AELTISDTVC ALDAPEALPA 
LTVDEPTISM TFQVNNSPFA GNKDLSGGKF LTSRQLRDRL EREKVHNVAL KVEEGSDADK 
FLVSGRGELH LSVLIENMRR EGYELAVSRP EVIIKEIDGK LMEPIEQLVV DIEEQHQGGV 
MEKLGTRKGQ LKNMEPDGKG RVRLDYMIPA RGLIGFQNEF RTLTQGSGLL FHVFDHYGPK 
EQGAIAKRQN GVMIANAPGA TPAYALGPLE ERGRLFAAEG DNVYEGQLIG IHSKDNDLTV 
NAIKTKPLTN MRASGKDDAI KLTPAIKYTL EQALDFIEDD ELVEVTPKEI RLRKKFLTES 
DRKRAGRSG