Gene PXO_02485 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_02485 
Symbol 
ID6307733 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand- 
Start bp4336997 
End bp4338004 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content65% 
IMG OID642641469 
Productisocitrate dehydrogenase 
Protein accessionYP_001915307 
Protein GI188578378 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.413989 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCAGA CAATCACGGT CATCCGCGGC GACGGTATCG GCCCGGAGAT CATGGATGCC 
ACGCTGTTCG TGCTCGACGC GCTGCAAGCT GGCCTGACCT ACGAATACGC AGACGCCGGC 
CTGGTCGCGC TGGAAAAGCA CGGCGATCTG CTGCCCGAGT CGACCCTGGC CTCGATCAGC 
AAGAACAAGG TGGCGCTGAA AAGCCCGTTG ACCACGCCGG TCGGCGAGGG CTTCAGCTCG 
ATCAACGTCG CCATGCGTCG CAAGTTCGAC CTGTACGCGA ACGTGCGTCC GGCCAAGTCG 
TTCCCGAACA CCAAGTCGCG TTTCGCCGAT GGCGTGGACC TGATCACGGT GCGCGAAAAC 
ACCGAAGGTG CCTACCTGAG CGAAGGCCAG ACCGTGTCCG AGGATGGCGA GACCGCGTTC 
TCCGGCATCC TGATCACTCG CAAGGGCTCC GAGCGCATCG TGCGCTACGC CTTCGACCTG 
GCGCGCGCCA CCGGCCGCAA GAAGGTCACC GCGGTGCACA AGGCCAACAT CATCAAGTCG 
ACCTCGGGCC TGTTCCTGAA GGTCGCCCGC GATGTGGCCG CGCAGTACCC GGAAATCGAA 
TTCCAGGAAA TGATCGTCGA CAACACCTGC ATGCAGCTGG TGATGCGTCC GGAGCAGTTC 
GACATCATCG TCACCACCAA CCTGTTCGGC GACATCCTCT CCGACCTGTG CGCCGGTCTG 
GTCGGCGGCC TGGGCCTGGC CCCGGGCGCC AACATCGGTC TGGACGCGGC GATCTTCGAA 
GCCGTGCACG GCTCGGCGCC GGATATCGCA GGGCAGGGCA AGGCCAATCC GTGCGCGCTG 
CTGCTGGGCG CCGCGCAGAT GCTGGACCAC ATCGGCCAGC CGCAGAACGC CGAGCGCCTG 
CGCGAAGCCA TCGTCGCCAC GCTGGAAGCC AAGGATTCCT TGACCCCGGA CCTGGGCGGC 
AGCGGCAACA CCATGGGCTT CGCCAAGGCC ATCGCCAGCC GCCTCTGA
 
Protein sequence
MTQTITVIRG DGIGPEIMDA TLFVLDALQA GLTYEYADAG LVALEKHGDL LPESTLASIS 
KNKVALKSPL TTPVGEGFSS INVAMRRKFD LYANVRPAKS FPNTKSRFAD GVDLITVREN 
TEGAYLSEGQ TVSEDGETAF SGILITRKGS ERIVRYAFDL ARATGRKKVT AVHKANIIKS 
TSGLFLKVAR DVAAQYPEIE FQEMIVDNTC MQLVMRPEQF DIIVTTNLFG DILSDLCAGL 
VGGLGLAPGA NIGLDAAIFE AVHGSAPDIA GQGKANPCAL LLGAAQMLDH IGQPQNAERL 
REAIVATLEA KDSLTPDLGG SGNTMGFAKA IASRL