| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02353 |
|---|
| Symbol | |
|---|
| ID | 6307591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 4201160 |
|---|
| End bp | 4201825 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642641329 |
|---|
| Product | fimbrial assembly membrane protein |
|---|
| Protein accession | YP_001915177 |
|---|
| Protein GI | 188578248 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3167] Tfp pilus assembly protein PilO |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.658699 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGA AATCATTCAA GCTCAGCGAT CTGGATTTCA ACAACATTGG CGGCTGGCCG
AAGCAGGCAC GTATCGTGTT CTGCGTAGTG GTCGGCCTGT TCATCATGGT GCTGGCCTGG
TTTCTGTTGA TCAGCAGCAA ACGCGATGAA CTCGAAGGCC TGGAAGGCAC CGAATCCCAA
CTGCGCACCG AGTTCGAGAC CCAGCAGGGC CGCGCGGTGA ATCTGGAGCC GCTCAAGCAG
CAGCTCGCGC AGATGGAGCA GGTGCTGCAG CAGATGCTGC GTCAGCTTCC CAGCAAGACC
GAAATGCCGG ATCTGATCAT CGATGTTTCG CAGACAGCGT TGTCCAGCGG CCTGTCCAAT
GAGCTGTTCC AGCCTGGTCC TGAATCGCCG AAGGAGTTCT ACGCCGAGAA GCCGATCGCT
CTGCGCATGG TGGGCAGCTA CCACCAGTTC GGTGCCTTCG TCAGCGGTGT GGCCTCGCTG
CCGCGCGTGG TGATCCTGAC CATGCACGAC ATCAACCTCA AGCCCAAGGA TCCCAAGGCC
GGTATCGGCG CGCGCGGCGC GCTGGAACTG TCCGGCACGG TCAAGACCTA TCGTTATCTT
GACGATGAGG AAATGGCCGA GCAGGAAAAG GCTGCAGCCA ACGCTGCGAA GAAGGGCGGC
CAATGA
|
|---|
| Protein sequence | MSQKSFKLSD LDFNNIGGWP KQARIVFCVV VGLFIMVLAW FLLISSKRDE LEGLEGTESQ
LRTEFETQQG RAVNLEPLKQ QLAQMEQVLQ QMLRQLPSKT EMPDLIIDVS QTALSSGLSN
ELFQPGPESP KEFYAEKPIA LRMVGSYHQF GAFVSGVASL PRVVILTMHD INLKPKDPKA
GIGARGALEL SGTVKTYRYL DDEEMAEQEK AAANAAKKGG Q
|
|---|
| |