| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02249 |
|---|
| Symbol | |
|---|
| ID | 6307434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 4034229 |
|---|
| End bp | 4035722 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642641173 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_001915021 |
|---|
| Protein GI | 188578092 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGCG CCAAGATCGA CCAATTCATC AGCGACACCT GGGACCGCGA GATCGTCCCG
CAGCTGGTCG ATTACATCCG TATTCCCAAC AAGTCGCCGA TGTTCGATAC CGATTGGGTG
GCCCATAGCT ACATGGAGCA GGCGGTCGTG TTGATGGAAA CCTGGGCGCG CGCGCAGGCC
ATCGACGGCA TGCAGATCGA GGTGGTGCGC CTGGAAGGCC GCACGCCGCT GATCTTTATC
GAGATTCCGG CCACCGGCCC CGAATCGGGC GACGACACCG TGCTGCTGTA CGGTCATCTG
GACAAGCAGC CGGAAATGAC CGGCTGGGAT GCCGACCTTG GCCCATGGGA GCCGGTGTTG
CGCGACGACA AGTTGTACGG GCGTGGCGGT GCCGACGACG GCTATGCCAT CTTCGGGTCG
CTGGCCGCGA TTCTGGCGCT GCGTACCCAG GGGCTGCCGC ATGCACGCTG CGTGATACTG
ATCGAGGCCT GCGAAGAATC CGGCAGCTAC GACCTGCCGG CCTATGTGGA CCATCTGGCC
GAGCGCATCG GCAAGCCCTC GTTGGTGGTG TGCCTGGATT CGGGCTGCGG CAACTACGAG
CAGCTGTGGT GCACGACCTC GCTGCGCGGG CTGACCGGCG GCAACCTGAC AGTCAAGGTG
CTGGAAGAAG GCGTGCATTC GGGCGACGCC TCGGGCGTGG TGCCGTCCAG CTTCCGCCTC
CTGCGTCAGC TTTTGTCGCG CATCGAAGAC GAAACCACCG GCCGCATCCT GCTCGACGGC
CTGCATGTGG AGGTGCCCGC CGAGCGGCTG ACCCAGGCGA AGGCCGCCGC GGCGACGCTG
GATACGGCCA TCTTCGACAA GTTCCCGATG GTCGATGGCC TGGTGCCAAT GCACGCGGAC
CTCACCGAAT TGGTGTTGAA CCGCACCTGG CGCCCGGCGC TGTCGATCAC CGGTGTGGAC
GGCATGCCGC CACTGGCGTC TGCAGGCAAT GTGCTCCGCC CCCAGACGGC GGTGAAACTG
TCGCTGCGAC TCCCGCCAAC AGCGGACGGC AAGGCCTGCG GCGAGTTGCT CAAGCAAGCA
TTGCTGCGCG ATCCGCCCAA CGGCGCGCAG GTCACGCTGG AGTTGGAGAA GGCCTCGTCC
GGCTGGAATG CGCCAGCCAT GGCAGCGTGG CTGGAAAAGG CCATCGACGA CGCCAGCAAG
GCGTTTTTCG ACAAGCCGGC GATGTACATG GGCGAAGGCG GCTCGATTCC GTTCATGGGC
ATGCTCGGCG AGAAGTTCCC CGGCGCGCAG TTCATGATCA CCGGTGTGCT TGGCCCACAT
TCCAATGCGC ATGGGCCGAA CGAGTTCCTG CATATCCCGA TGGGCAAGCG CGTGACCGCC
TGCGTGTCGA AGGTGATTGC CGACCATCAT GCTGCTTGTC TGCGCGGTGA AACCAGCGGC
TCGCCGGTGG CTGGCGATAG CGGCACCCGT CATGGTGGGT ATGGCTGCTG TTGA
|
|---|
| Protein sequence | MDSAKIDQFI SDTWDREIVP QLVDYIRIPN KSPMFDTDWV AHSYMEQAVV LMETWARAQA
IDGMQIEVVR LEGRTPLIFI EIPATGPESG DDTVLLYGHL DKQPEMTGWD ADLGPWEPVL
RDDKLYGRGG ADDGYAIFGS LAAILALRTQ GLPHARCVIL IEACEESGSY DLPAYVDHLA
ERIGKPSLVV CLDSGCGNYE QLWCTTSLRG LTGGNLTVKV LEEGVHSGDA SGVVPSSFRL
LRQLLSRIED ETTGRILLDG LHVEVPAERL TQAKAAAATL DTAIFDKFPM VDGLVPMHAD
LTELVLNRTW RPALSITGVD GMPPLASAGN VLRPQTAVKL SLRLPPTADG KACGELLKQA
LLRDPPNGAQ VTLELEKASS GWNAPAMAAW LEKAIDDASK AFFDKPAMYM GEGGSIPFMG
MLGEKFPGAQ FMITGVLGPH SNAHGPNEFL HIPMGKRVTA CVSKVIADHH AACLRGETSG
SPVAGDSGTR HGGYGCC
|
|---|
| |