| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02227 |
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| Symbol | rpoN |
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| ID | 6307456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 4053729 |
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| End bp | 4055126 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642641195 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001915043 |
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| Protein GI | 188578114 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.181012 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCCGC AATTGCGTCA GGCGATCAAG CTATTGCAGA TGTCCACCAC CGAGCTGGAA
GTGGAAATCG CCGAAGCAGT GGAAACCAAT CCACTGCTGG AATGGGCCGA CGAAGCCGCG
CATGCGGCCA GCGACACCGC GGTGGAATCC TCGCCGTCCG CGTCCACTGA AGAATCCCAG
CGCGAAGAAG CCGCGCCTGC CGAGCGCGAT GACGATTGGT CGCAGGACGA ACTGCAGTGG
ACCGGCTCGG GCAGCGGCGG CAGTTTCGAC GACGACGAGT CCGGCGGTGC CGCCGAGCGC
GTCGCCGAAT CCGAAACACT GGCCGATCAC CTCTTGTGGC AGCTGCATCT ATCGCCGTTG
TCGCCACGCG ACCGCCAGAT CGGCGCGATA CTGATCGACG CGCTGGACGA AGACGGTTAT
CTGCGCGAGC CGCTATCGGC CATTCTCGAA ACCCTGGCGC TCGGCGCGGT GGTGGACGAG
GCCGACGTGC TTACCGTCTT GCACCAGATC CAGCGCTTCG ACCCGGTCGG TGTGGGCGCG
CGCACGCTAG GCGAATGTCT GGCGCTGCAG CTGGCCGTGC TCGACCCCGC AACGCCGGGC
CGCGAGCTGG CGTTGCAGAT CGTCGCCGGC CCGCTGGAAC GGCTGCCGCG CAGCGGCGTA
GCCGGCCTGG CACACGAGCT CAAGCGTTCA GCCGCCGATG TCGAACAGGC GGTGCAACTG
GTGCGCTCAG TGGACCCGCG CCCAGGCAAG CAGATCGGCG ACCTGTCGCA AGATACCTAC
GTGGTACCGG ACTGCGTGAT CTGGCGTCAG CGCGGCGTGT GGCGGGCTTC GCTGGCCGGC
CGTGCGCAGC CCAAGGTCAC CATCCACCGC GGCTACGAAA ACCTGATTCG CAGCTGCGGC
GAATCCGACG CCGGCTACCT GCGCGGGCAG CTGCAGGAAG CGCGCTGGCT GCTCAAGAGC
CTGGAAGCAC GCGGCGAAAC CCTGCTGCGG GTGGTGCGCT GCCTGCTGCA GCATCAGGCC
GGGTTCCTGG AGTTCGGTGC ACAGGCCCTG CGTCCGTTGA CCCTGCGCGA GATCGCAGGC
GAGCTCGGCC TGCACGAATC CACCATTTCC CGCGCGATCT CCCGCAAATA CGTGCGCACC
CCGCGCGGCA CCATTGCGCT GCGCTCGTTC TTCGCCTCGG GGATCGACAC CGACAGCGGC
GGCGAGGCTT CCAGCACGGC GATCCAGGCC ATGATCCGGC GCCTGATCGA TGCGGAAAAT
CCGCGCAAAC CGCTGTCCGA CGCCAAGCTG GCCGATCTGC TGAAAACATC CGGCGTACCA
GTAGCGCGGC GCACCGTTGC GAAGTATCGT GAGGCCATGA ACATTTCCGC CTCCCACGAA
CGCGTCCGCA TCGCCTGA
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| Protein sequence | MTPQLRQAIK LLQMSTTELE VEIAEAVETN PLLEWADEAA HAASDTAVES SPSASTEESQ
REEAAPAERD DDWSQDELQW TGSGSGGSFD DDESGGAAER VAESETLADH LLWQLHLSPL
SPRDRQIGAI LIDALDEDGY LREPLSAILE TLALGAVVDE ADVLTVLHQI QRFDPVGVGA
RTLGECLALQ LAVLDPATPG RELALQIVAG PLERLPRSGV AGLAHELKRS AADVEQAVQL
VRSVDPRPGK QIGDLSQDTY VVPDCVIWRQ RGVWRASLAG RAQPKVTIHR GYENLIRSCG
ESDAGYLRGQ LQEARWLLKS LEARGETLLR VVRCLLQHQA GFLEFGAQAL RPLTLREIAG
ELGLHESTIS RAISRKYVRT PRGTIALRSF FASGIDTDSG GEASSTAIQA MIRRLIDAEN
PRKPLSDAKL ADLLKTSGVP VARRTVAKYR EAMNISASHE RVRIA
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