Gene PXO_02148 details

Gene Information

• Locus tag: PXO_02148
• Symbol: rimM
• ID: 6307413
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: -
• Start bp: 4017679
• End bp: 4018221
• Gene Length: 543 bp
• Protein Length: 180 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 642641153
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001915001
• Protein GI: 188578072
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 0.899687
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCGCCAC CTGACCCAGA GTCGACGCAG ATGAAGCAGA CCGAGCGCCG CATCCTGTTA 
GGCAGGGTTG TCGGCGCTTT TGGTGTCAAG GGCGAGCTGA AGCTCGAATC CTGGACCGAG 
CCGCGTAGCG CGATCTTTCG GTATCAACCG TGGATCGTGC GTGCGCCATC GGGACAGGAA 
TCGGTCATCA ACGGCGTGCG TGGGCGCGAT CAGGGCAAGA ATCTGATTGC GGTGTTCCCC 
GGCGTCGCCG ACCGCGACAC CGTCGAGGCC ATGCACGGGA CTGAAATCTA CGTCGCGCGC 
AGTGCCTTGC CGCCACCCAA GCCCGATGAG TATTACTGGG TGGATCTGGA AGAGTTGCAG 
GTGGAAACCG TCGAGGGCGT CAAGCTCGGC ACGGTGTCGC ATCTGTTCTC CACTGGATCC 
AACGACGTGG TGGTCGTACG TGGCGATCGC GAGCGGATGA TTCCGTTTGT GTTTCCGGAT 
TTCGTCAAAT CCGTGGACTT CGAGGCCAAT CTGATCGTGG TCGACTGGGA TCCGGATTTC 
TGA 

 

Protein sequence

MSPPDPESTQ MKQTERRILL GRVVGAFGVK GELKLESWTE PRSAIFRYQP WIVRAPSGQE 
SVINGVRGRD QGKNLIAVFP GVADRDTVEA MHGTEIYVAR SALPPPKPDE YYWVDLEELQ 
VETVEGVKLG TVSHLFSTGS NDVVVVRGDR ERMIPFVFPD FVKSVDFEAN LIVVDWDPDF