| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02040 |
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| Symbol | |
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| ID | 6307277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 3871084 |
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| End bp | 3873627 |
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| Gene Length | 2544 bp |
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| Protein Length | 847 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 642641021 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_001914869 |
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| Protein GI | 188577940 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.406402 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATCC CGACGCTGGC CGTCGCCCTG GCTAGTCTGG CGCAGCCGTC CCAACATGCC
CGCCTGATCC AACTGCGCGC CCCGGTCGAG GGGCTGGTGG TGGAACGCTT CCACGGGCAG
GAGGCGGTGT GCGGCGCCAC CGTGCTGCAG ATCGCGTGCC TGGCCACCTC GGCGTTTCTC
GATGCCGAGG CGCTGCTGGA GCAGCCACTG GACCTGCAGC TGCGCCAGGC CGACGGCACG
CAACGCCACT GGCAGGGCCT GTGCACCGAA GTGGCGCAAC TGGGCGGCGA CGGCGGCCTG
GCCCGCTACC GGCTGACCCT GGCGCCGTGG ACGGCGCTGC TGGAGCTGCG GCGCAACGCG
CTGGTGTTCC AGGACCTGGA CGCGCGCGCG ATCTGCGAAC GGATCTTCGC CGACTACCCG
CAGGCCGCGT TCCGCTTCGA CGTGCAGGCC GCGTTGCCGG CGCACCCGAT CACCACCCAA
TACCGCGAGA CCGACTGGGC CTTCGTCACC CGCCTGCTGG CCGAGGCCGG CCTGGCCTGG
CGCTACGCGC ACGCGCAGGA CGCCGACAGC CAGGCCACCG CGGCCACGCT GGTGATCTTC
GACCCGCAGG CGCAGGTGCC GGACAGCGGC ACGATCCGCT TCCACCGCAG CGACCTGGCC
GAGGCCGACG ATGCGATCGG CGCCTTCGGC GAGCGCCGCG GCGTCGTGCC CACCGCCAGC
ACGGTGACCA GCTGGCACAG CGAGCAAGTG CGCGCGGTCG GCGCGCAGGC CCAGGCCCAG
GCCGAGGCCG GCGCGCTGCC GCCGCTGGAG GTCTACGTGC AGCCGCGCGC CGGGCGTTTC
GCCCAGGAGG CGACCGCGCA GGATCAGGCG CAGGCGCGGC TGGACGCGCT GCGCGTGCCG
CACACGCTGC ACGCCGGGGC CGGCAGCGCC CGCGTGCTGG CGGCCGGGGC GGCGTTCACC
TTGCGCCAGC ACGCCCAGCA CGACGGCCAG CATTTCGTTC CGGTGGCGAT CGAGCACGTG
GCGGTGAACA ACCTGGGCCA GGGCATCGTC GCCCTGCTGG ACGCGCCGGA GCTGGAGCAC
GGCAGCTACC GCAACCGTTT CCTGGCGGTG CCGGCGGCCA CGCCGCTGCG CGCGCTGCCG
CAGGACCGCC CGCGCATGCC CGGGCCGCAG AGCGCGCGCG TGGTCGGCGT GGCCGACGCG
GCGCTGAGCC CGAGCCGCGA CCACCAGGTG CGGATCCAGT TCCCGTGGCA GCGCGGCGAC
CAGCCCACCC CGGGCGGGTT GACCGACAGC GCCAGCACCG CGCCCGGCCA CGCGCCGGGC
GACCAGCGCG CCGGCACCTG GGTGCCGGTG GCCGAGTGGG TGGCCGGCCC GAACTGGGGC
AGCCACTTCC TGCCGCGCAT CGGCAGCGAA GTGCTGGTGG AGTTCCTGCA CGGGGACATC
GATCAGCCGC GCATCACCGG CCAGTTGTAC AACGGCGAGC TCGCCCCACC CTTCGGCGGC
GGCCTGGACG CGCATGCCAG CCACCCCGGC ACGCTCAGCG GCCTGCACAC CCAGTCCCAC
GACGGCAGCG GCACCCAGCA ATGGCTGCTG GACGACACCC CCGGCCAGCT GCGCACGCGC
CTGCACACCT CGCTGGCCGA CACCCGGCTG GAACTGGGCT ACCTGGTCCA GCACAGCGAC
ACCGCCCGCG GCGCGCTGCG CGGCCAGGGC TTCGAACTGG CCTCCCAGGG CTGGGGCAAC
GTGCATGCCG CGCAAGGCCT GCTGCTGTCC AGCAGCGCCC GCGGCCAGGG CGCCTCGACC
GCATTGGACG TGGCCGAGGC GGTGGCCCAG TTGCACGGCG CCCAACGCAC CGCTCAGGCG
CTGCACGCCA CCCTGACCCA GCAACAGGTG CCCGGCCTGG ACGCCCATCC CAGCGTGACC
CGGCTGCGCG AGGCCATCGA CCCGCAAGCG CAGGGCAAGT ACACCGCTGC GGTCGGCGGC
CAGGCAGCGA CCACGCCGGC CGACGGCGGC CGCGACGGCC AGGCACCGGT GGAACGCTTC
GCCCAGGCGC GCCTGCTCGG CGAGTCGCCG GACCACATCG CCTGGACCAC CCCGGCCAGC
GCGGTGGCCT ATGCCGGGCA GGCCCTGCAG TTGACCGTGC AGCAGGATGC GCAGCTGAGC
GCCGGGCAGA CCCTGTCGGC GGTGTCCGGC CAGCACACCG CGCTGTTCGC CCAACGCGGG
CCGATCAAAC TCATCGCCGC CGCCGGCCCG GTGAGCCTGC AAGCACATAC CGGCGCGCTG
GAACTGCTGG CCGACCAGGC GGTGACCGTC ACCGCCACCG ACACCCGCAT CGACGTGCTG
GCGCAGCACA AGATCGTGCT GCAGGCCGGA CAGACCTGCA TCACCCTGGA AGGCGGCGAC
ATCACCTTCG CCTGCCCGGG GCAGTTCACG GTCAAGGCCA GCACGCATCC GTTCTTGGGT
GGGGAGAGCG GCAACCCCCA ATTCGCCTTG CCCGATGGGC TGGTGCATCT GGAACCAGAC
CGCATGCTCG ATTTCTCGGG CTGA
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| Protein sequence | MDIPTLAVAL ASLAQPSQHA RLIQLRAPVE GLVVERFHGQ EAVCGATVLQ IACLATSAFL
DAEALLEQPL DLQLRQADGT QRHWQGLCTE VAQLGGDGGL ARYRLTLAPW TALLELRRNA
LVFQDLDARA ICERIFADYP QAAFRFDVQA ALPAHPITTQ YRETDWAFVT RLLAEAGLAW
RYAHAQDADS QATAATLVIF DPQAQVPDSG TIRFHRSDLA EADDAIGAFG ERRGVVPTAS
TVTSWHSEQV RAVGAQAQAQ AEAGALPPLE VYVQPRAGRF AQEATAQDQA QARLDALRVP
HTLHAGAGSA RVLAAGAAFT LRQHAQHDGQ HFVPVAIEHV AVNNLGQGIV ALLDAPELEH
GSYRNRFLAV PAATPLRALP QDRPRMPGPQ SARVVGVADA ALSPSRDHQV RIQFPWQRGD
QPTPGGLTDS ASTAPGHAPG DQRAGTWVPV AEWVAGPNWG SHFLPRIGSE VLVEFLHGDI
DQPRITGQLY NGELAPPFGG GLDAHASHPG TLSGLHTQSH DGSGTQQWLL DDTPGQLRTR
LHTSLADTRL ELGYLVQHSD TARGALRGQG FELASQGWGN VHAAQGLLLS SSARGQGAST
ALDVAEAVAQ LHGAQRTAQA LHATLTQQQV PGLDAHPSVT RLREAIDPQA QGKYTAAVGG
QAATTPADGG RDGQAPVERF AQARLLGESP DHIAWTTPAS AVAYAGQALQ LTVQQDAQLS
AGQTLSAVSG QHTALFAQRG PIKLIAAAGP VSLQAHTGAL ELLADQAVTV TATDTRIDVL
AQHKIVLQAG QTCITLEGGD ITFACPGQFT VKASTHPFLG GESGNPQFAL PDGLVHLEPD
RMLDFSG
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