| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01921 |
|---|
| Symbol | |
|---|
| ID | 6307178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 3753142 |
|---|
| End bp | 3756267 |
|---|
| Gene Length | 3126 bp |
|---|
| Protein Length | 1041 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642640924 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_001914772 |
|---|
| Protein GI | 188577843 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.413816 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCT CCGACCTGTC GATCACCCGC CCGGTGATGG CGGTGGTGAT GAGTTTGCTG
CTGATCGTGC TGGGGGTGAT GTCGTTCACC CGCCTCACCC TGCGCGAGTT GCCGGCGATC
GACCCGCCCA TCGTCTCGGT GAATGTGGAA TACACCGGTG CCTCGGCGGC AGTGGTGGAA
AGCCGCATCA CCCAGGTACT GGAAGACGGG CTGGCCGGCA TCGAGGGCAT TTCCACCATT
GAAGCGCACA GCCGCAATGG CTCCTCCGAT ATCAGCATCG AATTCGTGCA ATCGCGCGAT
GTGGAAGCGG CCGCCAACGA TGTGCGCGAC GCGGTCAGCC GCGTGTCCGA CCGCATGCCC
GACCAGGCGC GCGCGCCGGA GATTTCCAAG GTCGAAGCCG ACGCCGACCC CATCCTGTGG
CTCAACATGA GCTCCAGCAC CATGGACACG CTGCAGCTGT CCGACTATGC CGAGCGCTAT
GTCGTCGACC GCTTTTCCAG CCTGGATGGC GTGGCGCAGG TGCGGATCGG CGGACGCCAG
CGCTATGCAA TGCGCATCTG GCTGGACCGC GACCAACTGG CCGCACGCGA CCTCACTGTC
GCCGATGTGG AAGCGGCGCT GCAGAACGAA AATGTGGAAG TGCCTGCCGG CAGTATCGAA
TCGGCGCAGC GCGATTTCAC CTTGCGCGTG GAGCGCAGTT ATCTCAAGCC CGAAGACTTC
GCCAAGCTGC CCTTGAACAA GGGCGAGGGC GGTTACGTGG TGCGTCTGGG CGACGTGGCC
AGGGTCGAGC TGAGCTCGGC CGAGCGGCGC GCGTATTTCC AGAGTAACGG CGTGCCGAAT
GTGGGCCTGG GCATCGTGCG TAACTCCACC GCCAACGCGC TGGATGTGGC CCGCAAAGCA
CGCGCGCGCG CTATAGAAGT GCAGAAGTCG CTGCCGCAGG GCACGAATAT TTTCGTCGCC
TTCGACACCA CCACCTTCAT CGACGCCGCG GTGGAGCGCG TTTATCACAC GCTGGTGGAA
GCGGTGGTCC TGGTGCTGGT GGTGATCTGG GTGTTTCTGG GTAGCGCGCG CGCCGCATTG
ATCCCCGCGG TGACGGTGCC GGTGTGCCTG ATCGCCTCCT TTATCGCGCT GTATGCGTTC
GATTTTTCGA TCAACCTGCT CACCTTGCTG GCGTTGGTGC TGTGTATCGG CTTGGTGGTG
GACGACGCCA TCGTGGTGGT GGAAAACATC CAGCGCCGCA TCGATCTGGG CGAGCCGCCG
CTGGTGGCCG CCAAGCGTGG TACCGGGCAG GTGGCGTTTG CGGTGATTGC GACCACCGCG
GTGCTGGTGG CGGTCTTTGT GCCGGTCGGT TTTCTGCAAG GCAATACCGG GCGGCTGTTC
CGTGAGCTGG CGGTGGCGCT GGCGGCGGCG GTGGCGATCT CGGCCTTCGT GGCGCTGACG
TTGACGCCTA TGATGTCGTC CAAGTTGTTG CGCGCGCATG GGCAGGCCAA ACCCAATCGC
TTTCACCAAT GGTTCGATGG GCGCATGCAG GCGGTGTCCG GTGCGTATGG GCGCTCGCTG
GAGCGGCATG TGCACCGCAC CTGGGTCTTT GCGCTGCTGA TGCTGTTGGC GCTGGGCGCC
AGCGCATGGC TGATGGGCCG CATTCCTTCC GAAGTGGCGC CGGCCGAGGA CCGCGGCAAT
TTCCAGATCA TGATCGACGG CCCGGAAGGT GCCGGCTTCG ATTACACGGT GGGGCAGATG
CATCAGGTGG AAGACATCCT GCGCCCCTTC GTGGGCCCGG ACAAACCCAT CGTGCGCGCC
AACCCGCGCG TGCCCGGCAG CTTCGGCAGC AGCGAGGAAA TGCACACCGG CCGGGTCAGC
GTGTTCTTGC AGGATTGGGA AAAGCGCACC CGCCCCACTA CCGAAGTGGC CGATGAGGTG
CAGCAGAAAC TCAATGTGCT CAGCGGCGTG CGTGCACGCA CGCAGGTGAG CGGAGGCCTG
GTGCGTCGCC GTGGGCAACC GTTCCAGCTG GTGCTGGGCG GGCCGGATTA CGCGGAGATT
GCGCAGTGGC GCGATCGCAT CCTGCAGCGC ATGGAAGCCA ACCCCGGCCT GGTCGGCCCC
GACTCCGATT ACAAGGAAAC CCGCCCGCAG ATGCGCGTCA ATATTGATCG CGTGCGCGCG
GCCGATCTCG GCGTGCCGGT AACTGCGATT GGCGGCGCGC TGGAAGCATT GATGGGCTCA
CGCCGCGTCA CCACCTTCGT CGACAACGGC GAGGAGTACG ACGTGATGCT GCAGGCCGGG
CGCGAAGGCC GCATGTCGCC GGAAGATCTC ACCGCGATCC GCGTGCGCTC CAACCGTGGC
GAGCTGATTC CGCTTTCCAA TCTGGTGACT TTGAGCGAAG TCGCCGAAGC CGGCACCTTG
AATCGCTTCA ATCGCCTGCG TGCAATCACG ATCACGGCGG GCCTGGCACC AGGTTATCCA
CTCGGCGATG CCATCGCCTG GGCGCAGCAG GCGGCGCAGG AAGAACTACC CGAATACGCG
CAAGTGGACT GGAAGGGCGA ATCGCGCGAA TACCAGCAAT CCGGCAGTGC GGTGTTGTTG
ACCTTCGGCA TGGCGCTGCT GGTGGTGTAT CTGGTGCTGG CCGCGCAGTT CGAAAGTTTT
GCGCACCCGT TGGTGATCAT GCTCACGGTG CCGTTGGCGG TGCTGGGCGC GCTGGTGGGC
TTGTGGCTGA CCGGTGGCAC GCTCAACCTG TTCAGTCAGA TCGGCATCGT GATGCTGGTG
GGCCTGGCAG CCAAGAACGG CATTCTGATT GTGGAATTCG CCAACCAATT GCGCGACGAG
GGCCGCAGCG TGCATGCGGC GATCGTGGCG TCGGCCTCGG TGCGTTTGCG CCCGATCCTG
ATGACCTCGA TTGCCACGGT GGTCGGCGCG ATTCCGCTGG TGGTGGCCGG CGGGCCCGGC
TCGGCCAGCC GCGCCACGAT TGGCGTGGTG GTGATCTTCG GCGTCTCGCT GTCCACGGTG
TTGTCGCTGT ACGTGGTGCC GGCGTTTTAC AGCCTGATCG CCCCGTACAC CAGGTCGCCT
GAAGCGGTGG CACGCCAGCT GGAAACCCTG GACGCGCAGA CACCCTCAGT GGGCGGACAT
GCGTGA
|
|---|
| Protein sequence | MKLSDLSITR PVMAVVMSLL LIVLGVMSFT RLTLRELPAI DPPIVSVNVE YTGASAAVVE
SRITQVLEDG LAGIEGISTI EAHSRNGSSD ISIEFVQSRD VEAAANDVRD AVSRVSDRMP
DQARAPEISK VEADADPILW LNMSSSTMDT LQLSDYAERY VVDRFSSLDG VAQVRIGGRQ
RYAMRIWLDR DQLAARDLTV ADVEAALQNE NVEVPAGSIE SAQRDFTLRV ERSYLKPEDF
AKLPLNKGEG GYVVRLGDVA RVELSSAERR AYFQSNGVPN VGLGIVRNST ANALDVARKA
RARAIEVQKS LPQGTNIFVA FDTTTFIDAA VERVYHTLVE AVVLVLVVIW VFLGSARAAL
IPAVTVPVCL IASFIALYAF DFSINLLTLL ALVLCIGLVV DDAIVVVENI QRRIDLGEPP
LVAAKRGTGQ VAFAVIATTA VLVAVFVPVG FLQGNTGRLF RELAVALAAA VAISAFVALT
LTPMMSSKLL RAHGQAKPNR FHQWFDGRMQ AVSGAYGRSL ERHVHRTWVF ALLMLLALGA
SAWLMGRIPS EVAPAEDRGN FQIMIDGPEG AGFDYTVGQM HQVEDILRPF VGPDKPIVRA
NPRVPGSFGS SEEMHTGRVS VFLQDWEKRT RPTTEVADEV QQKLNVLSGV RARTQVSGGL
VRRRGQPFQL VLGGPDYAEI AQWRDRILQR MEANPGLVGP DSDYKETRPQ MRVNIDRVRA
ADLGVPVTAI GGALEALMGS RRVTTFVDNG EEYDVMLQAG REGRMSPEDL TAIRVRSNRG
ELIPLSNLVT LSEVAEAGTL NRFNRLRAIT ITAGLAPGYP LGDAIAWAQQ AAQEELPEYA
QVDWKGESRE YQQSGSAVLL TFGMALLVVY LVLAAQFESF AHPLVIMLTV PLAVLGALVG
LWLTGGTLNL FSQIGIVMLV GLAAKNGILI VEFANQLRDE GRSVHAAIVA SASVRLRPIL
MTSIATVVGA IPLVVAGGPG SASRATIGVV VIFGVSLSTV LSLYVVPAFY SLIAPYTRSP
EAVARQLETL DAQTPSVGGH A
|
|---|
| |