Gene PXO_01782 details

Gene Information

• Locus tag: PXO_01782
• ID: 6306534
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 3103931
• End bp: 3104494
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642640288
• Product: RNA polymerase sigma factor
• Protein accession: YP_001914145
• Protein GI: 188577216
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.126862
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGCCA TTCCTGGCCA CGACGACGAT GAGACCGGAC GCCTGCTGAC CGCAACCGCG 
GGCGGCGACC GGCATGCTTT CGAAGCGCTG TACCGGCAGA CCTCGCCCAA GCTGTTCGGG 
GTATGCCTGC GCATGATCCC GCAACGTGCC GAAGCCGAAG AGGTGCTGCA GGATGTGTTT 
ACGCTGATCT GGCACAAGGC CGGGCAGTTC GACCCGAGCC GCGCACGCGG GCTGACCTGG 
CTGGCGATGA TCGCGCGCAA CAAGGCGATC GACCATCTGC GCGCCAACGC GCCGCAGCGC 
CGCAACGTGG CGCTGGACGA TGCCGGCGAG CTACGTGCCA ACGATGCCTC GCCGCTGGAG 
CGCACCGAGC GCGCCAGCAC GCGGCGGCGC ATCGATCATT GTCTGGCCGA ACTGGAGCCG 
CCGCGCAGCG AATTGATCCG CACTGCGTTC TTCGAAGGCA TCACTTACGA AGAACTCGCC 
GCGCGCACCG ACACACCGAT CGGCACGATC AAAAGCTGGA TCCGTCGTGG TCTGGCCAAA 
CTCAAGGCAT GTCTGGAACG ATGA 

 

Protein sequence

MSAIPGHDDD ETGRLLTATA GGDRHAFEAL YRQTSPKLFG VCLRMIPQRA EAEEVLQDVF 
TLIWHKAGQF DPSRARGLTW LAMIARNKAI DHLRANAPQR RNVALDDAGE LRANDASPLE 
RTERASTRRR IDHCLAELEP PRSELIRTAF FEGITYEELA ARTDTPIGTI KSWIRRGLAK 
LKACLER