| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01722 |
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| Symbol | rumA |
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| ID | 6306595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 3163215 |
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| End bp | 3164471 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642640349 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001914206 |
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| Protein GI | 188577277 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGCGTC GCGACGGCGA GGGCGGCAAG GTCACCTTCA TCAGCGGCGC CTTGCCGGGC
GAGTTGGTGC GTGCCGAACC CACCGCCCGC AGTCGCCATT TCGATGAGGC CAAGACAGTG
GAGGTGCTGG AGGCATCCCC GCAGCGCGTC GCCCCGCGCT GTCCGCATTT CGGCGTTTGC
GCCGGTTGCG TGTTGCAGCA TCTTGAGGAA TCGCAGCAGA TCGTGGCCAA GCAGCGCGTG
CTGATGGATA ACCTTGAGCG CATCGGTCAT GTCACCCCGC AGGCCGTGCT GCCTGCGCTG
ACCGGCGACA ACTGGGGCTA TCGGCGCAAG GGCCGGTTCT CGGTGCGCCG CGTGGAGAAG
AAGGCCAAGA CCCTGGTTGG CTTTCGCGAG CTCGACCCGC GGTTCGTGGC CGATTTGTCC
GTCTGCTACA CGGTGATCCC GCAGATCGGC GAGAAGATCC CGTTGCTGGC CGCGCTGGTC
GAAGGCATGG ACGGCAAGCG CGACATTCCG CAGATCGAAT TCATTGCCGG CGACGATGCG
GTGGCATTGA CCATTCGGCA TATGCAGCCG CTCAGCGCGC GCGACCAACA GGCCTGGATC
GCATTTGCGC AGGAGCACGG GTTTGCGATC TTCCTGCAGC CTGGCGGCGT GGACAGCGTG
CATCCGCTGT GGCCGCAGGA AGTGCCTTTG TCGTTCCGTT TGCCGCAATG GGATGTGGAC
CTGGCGTTCC GGCCGCTGGA CTTCATCCAG GTCAACGCCT CGCTCAATCA AAAGATGATC
GTGCACGCGC TGGCGCTGCT GGATGCCAAG CCCGACGACC GTGTGCTTGA CCTGTTCTGT
GGCCTGGGCA ATTTCACCCT GCCGTTGGCG CGCGTGGTGC GCGAGGTCGT GGGCGTGGAA
GGCGATGCCG GGCTGGTGGC GCGGGCCAAA GACAATGCCC AGCGCAATGG TCTGGACAAT
GCGCAGTTCT ACGCCGCCGA CCTGACCCAG GATCAGCGCA ACGCCGCCTG GATGCGCCAG
GGCTTCGACA AGCTGTTGCT GGACCCGCCA CGCTCCGGCG CCCTGGAAGT GCTGCAGCAG
TTACCGCTGA AGACGTTCGA GCGCATCGTC TACGTAAGCT GCCATCCAGG CTCGCTCGCG
CGCGACGCCG GCTACCTGGT CAACGAGCAA GGCTTCACGC TGGTCTCGGC TGGCGCGATG
GACATGTTCC CGCATACCGC CCACGTGGAA AGCATTGCGG TGTTCGAGAG GCGGTGA
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| Protein sequence | MARRDGEGGK VTFISGALPG ELVRAEPTAR SRHFDEAKTV EVLEASPQRV APRCPHFGVC
AGCVLQHLEE SQQIVAKQRV LMDNLERIGH VTPQAVLPAL TGDNWGYRRK GRFSVRRVEK
KAKTLVGFRE LDPRFVADLS VCYTVIPQIG EKIPLLAALV EGMDGKRDIP QIEFIAGDDA
VALTIRHMQP LSARDQQAWI AFAQEHGFAI FLQPGGVDSV HPLWPQEVPL SFRLPQWDVD
LAFRPLDFIQ VNASLNQKMI VHALALLDAK PDDRVLDLFC GLGNFTLPLA RVVREVVGVE
GDAGLVARAK DNAQRNGLDN AQFYAADLTQ DQRNAAWMRQ GFDKLLLDPP RSGALEVLQQ
LPLKTFERIV YVSCHPGSLA RDAGYLVNEQ GFTLVSAGAM DMFPHTAHVE SIAVFERR
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