| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01713 |
|---|
| Symbol | |
|---|
| ID | 6306604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 3171377 |
|---|
| End bp | 3172963 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642640358 |
|---|
| Product | periplasmic protease |
|---|
| Protein accession | YP_001914215 |
|---|
| Protein GI | 188577286 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCATC GCATCCGCAC CCAGATGTTC GGCCTGATCG CCATGACCCT GCCGCTGGCC
GCCTGCGCGC AGCAGCCCGC GCCCGCTGCC AAGGACGTCG CACCGATTGC CGCCAACCGC
AGTGCCACGC CAGCGCCACA GCTGGTGGCG GGGCTGCCGG ACTTCACCAA TCTGGTCGAG
CAGGTCGGCC CGGGCGTGGT CAATGTCGAA ACCACCATCA CCCGCAAGGA CGCCATGGCG
CGTCAGCAGC GCAGTGGCCC GGGTGGTCGC GGCGGTGGCG CAATGCCCGA TGACGATCAG
ATGCCGGAAT TCTTCCGCCG CTTCTTCGGT CCGGATTTCC AGATGCCGGG TGGGCCACGC
CAGGGGCCGG GTGGTCCGGG GCAGGGCGAT GACGACGGCG GTATTGCCGG CAAGTCGATG
GGCTCAGGCT TCATCATTTC CGCCGATGGC TATGTGCTGA CCAATCATCA CGTGGTCGAT
GGCGCCAGCG AAGTCACCGT CAAGCTCACC GACCGCCGCG AGTTCAAGGC CAAGGTGGTG
GGGAGCGATG AGCAATACGA CGTGGCGCTG CTGAAGATCG AGGCCAAGGG CCTGCCGACC
GTGCGCCTGG GCGATTCCAA TACGCTCAAG CCGGGCCAGT GGGTGGTGGC GATCGGCTCG
CCGTTCGGCC TGGACCACTC GGTCACCGCC GGCATCGTCA GTGCCACCGG CCGCAGCAAT
CCGTATGCGG ATCAGCGCTA CGTGCCCTTC ATCCAGACCG ACGTGGCGAT CAACCAGGGT
AATTCCGGCG GCCCGCTGCT CAATACGCGC GGCGAAGTGG TCGGCATCAA CTCGCAGATC
TTCTCCGCGT CGGGCGGCTA CATGGGCATT AGCTTTGCGA TCCCGATCGA CCTGGCCTTC
AGTGCCGCCG AGCAGATCAA GGCCACTGGC CATGTGAGTC GCGGCATGCT GGGTGTGCAG
GTCGGCCCGA TCGACTCGCT CAAGGCCCAG GGCCTGGGCT TGCCGGACAG CCGTGGTGCC
TTGGTGAACG ATATTCCGGC CGGCAGCCCG GCGGGCAAGG CCGGTGTCGA AGTGGGCGAT
GTGATCCGCG CGGTCAACGG CAAGCCGATC GACGTCGCCA GCGATCTGCC GCCGATGATC
GGGCTGATGG CGCCGGGTTC CAAGGTCACT CTTGATGTCT TGCGCGACGG CAAACCGCGC
AAGGTGACGG TCACCCTCGC ACCGCTCCAG GGTGGCAGCG AGAACGCCGC GCCGCGCACC
GCGGCCGATG AGGCCAAGCC CAGCGCCCCG GCCAGCGTGG AATTGCTCGG CCTGCAGGTC
GCCGATCTGA CCGCTGCCGA ACGCAGTCGT CTGGGTCTGG AGGCGGGGGA GGGCGTGCGC
ATCGCCTCGG TCACTGGCGC GGCGGCGCGC AGCACCCAGC CGCCGCTGTC GCCGGGCCTG
ATCATCGCCC GCGTCGGCCG CACCAAGGTC GGTAGCGTCG CCGAGCTCAA CCGCGCCCTG
TCCAGCTACA AAAAGGGAGA TGTGGTCATG CTGCTGGTCA CCGACGGCAA GGCAACCAGC
TACGTGGCCT TGAAGGCCGG CGGCTGA
|
|---|
| Protein sequence | MNHRIRTQMF GLIAMTLPLA ACAQQPAPAA KDVAPIAANR SATPAPQLVA GLPDFTNLVE
QVGPGVVNVE TTITRKDAMA RQQRSGPGGR GGGAMPDDDQ MPEFFRRFFG PDFQMPGGPR
QGPGGPGQGD DDGGIAGKSM GSGFIISADG YVLTNHHVVD GASEVTVKLT DRREFKAKVV
GSDEQYDVAL LKIEAKGLPT VRLGDSNTLK PGQWVVAIGS PFGLDHSVTA GIVSATGRSN
PYADQRYVPF IQTDVAINQG NSGGPLLNTR GEVVGINSQI FSASGGYMGI SFAIPIDLAF
SAAEQIKATG HVSRGMLGVQ VGPIDSLKAQ GLGLPDSRGA LVNDIPAGSP AGKAGVEVGD
VIRAVNGKPI DVASDLPPMI GLMAPGSKVT LDVLRDGKPR KVTVTLAPLQ GGSENAAPRT
AADEAKPSAP ASVELLGLQV ADLTAAERSR LGLEAGEGVR IASVTGAAAR STQPPLSPGL
IIARVGRTKV GSVAELNRAL SSYKKGDVVM LLVTDGKATS YVALKAGG
|
|---|
| |