| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01709 |
|---|
| Symbol | |
|---|
| ID | 6306607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 3174817 |
|---|
| End bp | 3176898 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642640361 |
|---|
| Product | fatty oxidation complex alpha subunit |
|---|
| Protein accession | YP_001914218 |
|---|
| Protein GI | 188577289 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCCAG GTTTCGACGG GCTCCGATTC AGCCATTGGC AGGCCGAGCT GCGCGAGGAC
GGCGTGGTCG TGCTCAGCCT CGATCGCCAG GACGCACCGG TCAACGCATT TTCCCAGGAG
GTGCTGCTGG AGTTGGGCGC ACTGGTCGAG CGCCTGGCAC TGGAGCCGCC CAAGGGCGTG
GTGCTGCGCT CGGGCAAAGC CAACGGTTTC ATCGCCGGTG CCGATCTGAA AGAATTTCAG
CAATTCGACC ACAAGGGCAC GGTCAACGAT GCGATTCATC GCGGGCAGCA GGTCTTTCAG
AAGCTGGCCG AACTGCCCTG CCCGACCGTT GCGGCGATTC ATGGCTTCTG CATGGGCGGC
GGCACCGAAA TCGCGCTGGC ATGCCGCTAC CGCGTGGCCT CCGACGATGG CAGTACGCGC
ATCGGGTTGC CGGAAACCAA GCTCGGCATC TTCCCCGGCT GGGGCGGCAG CGCCCGCTTG
CCGCGCCTGA TCGGTGCGCC GGCGGCGATG GACCTGATGC TCAGCGGCCG CACCGTGTCG
GCCAAGGCTG CGCGCGCAAT GGGTCTGGTC GACAAGGTCG CCGCACCTGC GGTGCTGGTC
GATGCGGCTG CGGCACTGGC GCTCGCGGGT ACGACGCGTC CGTTCCAGCA GCGCGCCACT
GCGTGGGCCA CCAACACCTT GCTGGCGCGC AAAATACTGG CGCCGCAGAT GCGCAAACAA
GTGGCCCGCA AGGCGCGCAA GGAGCATTAC CCTGCGCCAT ACGCGTTGAT CACGGTGTGG
GAGCGGGCTG GCGGCAGCGG CATCCAGGCC CGCCTGGCGG CCGAGCGCAA GGCAGTGGTC
AAGCTCGCCA GCACGCCGAC CGCACGCAAC CTGATCCGCA TCTTCTTCCT GACCGAGCGT
TTGAAGGCGC TGGGCGGCAA GGATGCAGCC GGCGCGGCAG CGACGCCGAT CCGCCATGTG
CACGTCATCG GCGCTGGCGT GATGGGCGGC GACATCGCGG CGTGGGCGGC CTACAAGGGC
TTCGACGTCA CATTGCAGGA CCGCGAGCAG CGTTTTATCG AGACGGCGCT GACGCGCGGC
GGCGAACTGT TCGCCAAGCG CGTCAAAGAC GACGCCAAGC GGCCGGCCGT GGCCGCGCGT
CTGCGCGGTG ACCTGGCCGG TGCGGGTGTG ACGCAGGCCG ATCTGGTGAT CGAGGCGATC
ATCGAAAACC CGCAGGCCAA GCGCGATCTG TATCAATCGA TCGAGCCGCA GCTCAAGCCG
GATGCATTGC TGACCACCAA TACATCTTCG ATTCCGCTGA CCGAACTGCG TGGCCACATC
CAGCGCCCGG CGCAGTTCGC CGGCCTGCAC TATTTCAACC CGGTGGCGAT GATGCCGCTG
GTGGAAATCG TGCAGCACGA TGGCCTGGAT CCCGCCAACG TGGCGCGCCT GGCTGCATTC
TGCAAGGCAC TGGACAAGTT CCCGGTGCCG GTGGCCGGCA CGCCGGGGTT CCTGGTCAAC
CGGGTGCTGT TCCCGTACCT GCTTGAAGCG GCCACCGCGT ATGCGGAAGG CATACCCGGC
CCGGTGCTGG ACAAGACGGC GGTGAAATTC GGCATGCCGA TGGGGCCGAT CGAGTTGATC
GACACCGTGG GTCTGGACGT CGCCGCCGGC GTGGGCGCGG AGTTGGCGCC GTTCCTGCAC
CTACCGATTC CGGCAGCGCT GATCACGGTG GAAGCCGGCA AGCGCGGCAA GAAGGACGGC
CAGGGCTTGT ACACGTGGGA GAATGGGCGT GCGGTCAAAC CGGAGGTTGC CAGTGGCTAC
ATCGCACCGG CAGATCTGGA AGACCGGCTG ATTCTGCCGC TGCTCAACGA AGCGGTGGCG
TGTCTGCACG ACGGCGTGGT GGCCGACGCA GACCTGCTCG ATGCCGGCGT CATCTTCGGC
ACCGGCTTTG CGCCCTTCCG CGGTGGCCCG ATCCAGCACA TCCGCAGCGT CGGCGCAGAT
GCGCTGCTGG AACGTTTGCA GGCGCTGCAC GCACGTTATG GCGAACGTTT CGCACCGCGC
CCGGGTTGGG ACTCGCCGGT GTTGCGGGAG GCGGTGGTGT AA
|
|---|
| Protein sequence | MLPGFDGLRF SHWQAELRED GVVVLSLDRQ DAPVNAFSQE VLLELGALVE RLALEPPKGV
VLRSGKANGF IAGADLKEFQ QFDHKGTVND AIHRGQQVFQ KLAELPCPTV AAIHGFCMGG
GTEIALACRY RVASDDGSTR IGLPETKLGI FPGWGGSARL PRLIGAPAAM DLMLSGRTVS
AKAARAMGLV DKVAAPAVLV DAAAALALAG TTRPFQQRAT AWATNTLLAR KILAPQMRKQ
VARKARKEHY PAPYALITVW ERAGGSGIQA RLAAERKAVV KLASTPTARN LIRIFFLTER
LKALGGKDAA GAAATPIRHV HVIGAGVMGG DIAAWAAYKG FDVTLQDREQ RFIETALTRG
GELFAKRVKD DAKRPAVAAR LRGDLAGAGV TQADLVIEAI IENPQAKRDL YQSIEPQLKP
DALLTTNTSS IPLTELRGHI QRPAQFAGLH YFNPVAMMPL VEIVQHDGLD PANVARLAAF
CKALDKFPVP VAGTPGFLVN RVLFPYLLEA ATAYAEGIPG PVLDKTAVKF GMPMGPIELI
DTVGLDVAAG VGAELAPFLH LPIPAALITV EAGKRGKKDG QGLYTWENGR AVKPEVASGY
IAPADLEDRL ILPLLNEAVA CLHDGVVADA DLLDAGVIFG TGFAPFRGGP IQHIRSVGAD
ALLERLQALH ARYGERFAPR PGWDSPVLRE AVV
|
|---|
| |