Gene PXO_01677 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_01677 
Symbol 
ID6306640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand
Start bp3215531 
End bp3216175 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content61% 
IMG OID642640394 
Producthemolysin III 
Protein accessionYP_001914251 
Protein GI188577322 
COG category[R] General function prediction only 
COG ID[COG1272] Predicted membrane protein, hemolysin III homolog 
TIGRFAM ID[TIGR01065] channel protein, hemolysin III family 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.588653 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCAG ACGCCTCCCC CTCGACCGAC CTGCGCGACG AAATTGCCAG TGCCGTGACC 
CACGGCCTGG GCGCCATTGC CGCATTGGCT GGCGGTTCGG TGCTGATCAC GCTGGCCGCC
ATCCATGGCG ATGGCTGGCA ATTGGCCACC GCCATCGTGT TCAGTGCCAC GCTGGTACTG
CTTTACGTCG CCTCCACGCT GTTCCATGCC ATTGCGCATC CAGGCGCCAA GGCGCGTCTG
CAGGTGCTCG ATCACTGCGC AATCTATCTA TTGATCGCCG GCACCTATAC CCCGTTCACG
CTGATCAACC TGCGTGGCCC CTGGGGCTGG GGATTGTTTG CGGCCGTCTG GACGATCGCC
GCCGCCGGAG TGATCTTCAA GATGTTTTTT ACCGGTCGCT TTCGCTTGCT GTCGACGGTG
CTGTATTTGG CAATGGGCTG GCTGATCATC GTGGCGATCC AGCCGTTGCT GCGCTCCGTC
GATACCTGGT CGCTGTACTG GCTGTTGGCA GGCGGTCTTT TCTACACGCT GGGCACGTAT
TTCTATCAAC GCGACAACCA GCGTTATTTC CACGCGATCT GGCACCTGTT CGTGCTCGCC
GGTAGCACTT GCCACTTCGT TGCCGTCATC GCGCAGGTGA TGTGA
 
Protein sequence
MNADASPSTD LRDEIASAVT HGLGAIAALA GGSVLITLAA IHGDGWQLAT AIVFSATLVL 
LYVASTLFHA IAHPGAKARL QVLDHCAIYL LIAGTYTPFT LINLRGPWGW GLFAAVWTIA
AAGVIFKMFF TGRFRLLSTV LYLAMGWLII VAIQPLLRSV DTWSLYWLLA GGLFYTLGTY
FYQRDNQRYF HAIWHLFVLA GSTCHFVAVI AQVM