| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01666 |
|---|
| Symbol | |
|---|
| ID | 6306651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 3223152 |
|---|
| End bp | 3226061 |
|---|
| Gene Length | 2910 bp |
|---|
| Protein Length | 969 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642640405 |
|---|
| Product | TonB-dependent outer membrane Receptor |
|---|
| Protein accession | YP_001914262 |
|---|
| Protein GI | 188577333 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.176148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTA AGTCCAACAA ACTGCGCGAC GCAGTTGTGC TCGCGTTGGT GCTCGGCACC
GGTAATGCCG TTCTGTCAGC GACTGCGGTC GCGCAGACCA AGCCAGCCGA CGAAGCAGCA
ACACTAGACG CGATCAACGT CACCGGTAGC CGTATCTCGA CGCCGGGCCT GACCACGAGC
AGCCCGGTCA CGAGCATTGA GCGTGAAGAT TTCATGCGCA CGCAGCCTGT TGCCGTAGAA
GAATTCGTCA AGCAGCTGCC GAGTGTTTCG CCGACCGTCG GTCCTGGTAC GAACAACGGC
GCCACTGGTG CAGCAGAACT CGACCTGCGC GGCTTGGGTT CGAACCGCAC GCTGGTGCTA
GTCGATGGCC GCCGTCCGGT TCCGTACGAT CTTTCCGGTG TCGTTGACAC CAATACGATT
CCTGTAGCGC TTATCCAAAG TGTGGATTTG CTGACCGGTG GCGCATCCGT GGTCTACGGT
GCTGACGCCA TTTCCGGTGT CGCAAACTTC ATCCTGCGCC GCGACTTCGA AGGCGTTGAG
GTTCAGAGCT CTTACGGTCA ATCCAAATAT GGCGATGGTG CGCGTCAGCG CATCGAAGCC
ACGATGGGCG CCAACTCGTC CGACGGCAAA GGCAATGTCG TGTTCAGTGT GGGTCACACC
AAAGTTGACC CGGTTTTCCA GGGCGATCGT GCCTGGGGGA AAGTGTCACG CTCTTCTGCT
AACGGACGTC CACAGGGCTC GGGCACCACC GTACCTTCGC TGATCGTGGG TCCGCCCGGC
GTGTGGGGCA CCCCAGGTGA TGACGGCACA CTGGACGGCA GAGGTCAGAT CGACCCGACC
ACCGGCCAGA TTGTCAGCGA CGTCCAAACG TATAACTTCA ATCCGATCAA CCTTTTCCAG
ACCGGACTGG ATCGGTATCA GGCAACCGCG CTGGGCCGCT ACGAAATCAA CGAGCATGCT
GAAGCGTACG GCCAGGTGAA TTACACCCGC TCACGCGTGG AAGCATCTCT GGCACCGAGC
GGCTTGTTTC AAGAAGCGTT CGACATGCCG ATTGGCAACC CCCTGATTCC TGAACCTGCT
CGCCAGCAGC TGTGCCAAGC GTATGGCATC GACGCTGCCA ACTGCGTTCC GGGCAACGCA
ACCATGATCG AAGGCCTGAC GATTGGCCGT CGCCTGACGG AGCTTGGCCC ACGCACCGAT
CGCTTCGATA CCAAGACCTT CCAGGTGACT GCCGGTCTGC GTGGCGCCAT TACCGATAAC
TGGAAGTACG ACGCGTTCTG GTCGCACGGT GAATCTGAGC GTCTTGCCGA ATCTCGCAAC
TGGGGCTCGC TGTCCAAGAC CCGCCAAGCC TTGATGTCTC TCGATGGCAG CACTTGCGTT
GATCCGAGCA ATGGCTGCGT ACCGCTCAAT GTCTGGGGTC CGGAAGGTTC TGTTTCGCCA
GAAGCACTCA AGTTTATCAA TTTGAGTGCT TTCTCGATCC AGAACGTTGA GCAGGACAAT
GCCGCGCTCA ACGTCAGCGG CGATCTGGGT GGATTCAAGA GCCCTTGGTC GGAATATCCG
ATTGGTGTCG CTGTGGGCGC CGAGCACCGT CGTGCAACGG CTGGTACACG TTCGGACGGC
CCGAGCCAGA TCCAGGGTGA AGTCATGGGC ACCGGCGCGC CGACCCCGGA TAGCCATGGC
GGCTTTACGA TCAACGAAGC ATTTGGCGAA TTTATCGTCC CTCTGATCGA TAACGCACCG
GGTGTCTACG CGCTCTCGCT GGAAGCCGGC TACCGCTACT CCGATTTCAA GACCAGCTCC
AATACCAGCG ACGAATACGG CAGCTTCAAG TACGGCATCA ACTGGGCGCC TATTGAAAGT
CTGCGTTTCC GCGGCATGTT CCAGCGCGCC AACCGTGCAC CTGGCATTGG TGAGCTGTTT
GCTCCGCAGG TTACCAGCCT GGACAACTTG GAGACCGATC CGTGCGCCGG CGGTGCAATC
AGCGCGGCAC AAGCGAATGT GCCGGGCACG CTGTCCAACC TGTGCGTGCA GACCGGTGTT
CCTGCCGGCT CGGCTGGCCT GGTTGCGCAA CCTAATGCTG GTCAAGTCAA TGTCCTGACC
GGTGGCAATC TGCTGCTGAC TCCGGAGCAG GCGGACACGC AGACGATTGG CCTGGTCTGG
AACCCCACCT CCAACTTCGC CATGACGCTG GACTACTGGA AGATTGAGAT GGAAAAAACC
ATCTCCTCGC AGAGCGTCGA TGACGTTATT TCCGGCTGCT ATGACCCTGC GTTCAATCCT
GGCCTGACCT TCAATAGCAA CTGCGCCCTA ATTGGACGGT CGCCGTTGAC GGGCACCTTC
AACGGCACCA CCTCTCGCGG CATTTCGCTG ATCTTGAGCA ACCAGGGTAC GTTGAAGACC
GACGGCTTCG ATCTCGGCCT GAAGTATGGC TTCGATCTAC CGGGCTCGAT GGGCCGCCTG
AACCTGGCCT ACGACGCAAC CTTGGTGACC ACCCTGGAAT CGCAGGCCAC TCCTGAATCG
GAAAACCGTG ATTGTCTGGG TTACTACAGC GTCAGCTGCA CGCCCAACTC GAAGTACCGC
TCCATCCTGC GCTCCAGCTG GTCCTACAAC GATCTGTCGG TGTCATTGGC ATGGCGTTAC
AACAGCAAGA TGGAAGTGGA GCCTGAAACC GGCACATGGT TTCAGAGCTA CCGCGAAATC
CCGTCGTATA GCTACTTTGA TTTTGGCGTG AACTACAAGC TGCCCTTCAA TGCCGAAGTC
AACCTGTCGG TGGCCAACCT GACGAACAAG AAGGCGCCAG TCGTCGGCAA TACGATCGGT
GACACCACTC AGAACAGCGG CAATACGTTC CCGAACTTCT ACGATGCAAT CGGTCGTTTT
TACACGCTGG GCATGACGTT CTCCTTCTAA
|
|---|
| Protein sequence | MNFKSNKLRD AVVLALVLGT GNAVLSATAV AQTKPADEAA TLDAINVTGS RISTPGLTTS
SPVTSIERED FMRTQPVAVE EFVKQLPSVS PTVGPGTNNG ATGAAELDLR GLGSNRTLVL
VDGRRPVPYD LSGVVDTNTI PVALIQSVDL LTGGASVVYG ADAISGVANF ILRRDFEGVE
VQSSYGQSKY GDGARQRIEA TMGANSSDGK GNVVFSVGHT KVDPVFQGDR AWGKVSRSSA
NGRPQGSGTT VPSLIVGPPG VWGTPGDDGT LDGRGQIDPT TGQIVSDVQT YNFNPINLFQ
TGLDRYQATA LGRYEINEHA EAYGQVNYTR SRVEASLAPS GLFQEAFDMP IGNPLIPEPA
RQQLCQAYGI DAANCVPGNA TMIEGLTIGR RLTELGPRTD RFDTKTFQVT AGLRGAITDN
WKYDAFWSHG ESERLAESRN WGSLSKTRQA LMSLDGSTCV DPSNGCVPLN VWGPEGSVSP
EALKFINLSA FSIQNVEQDN AALNVSGDLG GFKSPWSEYP IGVAVGAEHR RATAGTRSDG
PSQIQGEVMG TGAPTPDSHG GFTINEAFGE FIVPLIDNAP GVYALSLEAG YRYSDFKTSS
NTSDEYGSFK YGINWAPIES LRFRGMFQRA NRAPGIGELF APQVTSLDNL ETDPCAGGAI
SAAQANVPGT LSNLCVQTGV PAGSAGLVAQ PNAGQVNVLT GGNLLLTPEQ ADTQTIGLVW
NPTSNFAMTL DYWKIEMEKT ISSQSVDDVI SGCYDPAFNP GLTFNSNCAL IGRSPLTGTF
NGTTSRGISL ILSNQGTLKT DGFDLGLKYG FDLPGSMGRL NLAYDATLVT TLESQATPES
ENRDCLGYYS VSCTPNSKYR SILRSSWSYN DLSVSLAWRY NSKMEVEPET GTWFQSYREI
PSYSYFDFGV NYKLPFNAEV NLSVANLTNK KAPVVGNTIG DTTQNSGNTF PNFYDAIGRF
YTLGMTFSF
|
|---|
| |