| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01564 |
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| Symbol | tolB |
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| ID | 6306749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 3349127 |
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| End bp | 3350446 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642640501 |
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| Product | translocation protein TolB |
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| Protein accession | YP_001914357 |
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| Protein GI | 188577428 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.188797 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAC CGCTGCGTTG GCTAGCCGCC TTGACCGTCC TGTTGTTGCC GCTGAGCGCG
CTCGCGCAGC AGCAAGGCCT CACCATCGAT ATCGTCGGCG GTAGCGCTTC GGCCACGCCG
ATCGCCGTCA TTCCGATGCC TTACCAGGGC TCCGACACTG CACCGCAGAC CGATGTGTCT
GCGGTGGTCG GCGCCGACCT TGATCGTTCC GGCCAGTTCC GCACGCTGCC GGCCGCGCAG
ATCGTCGAAA AGCCGACCCG TGGCACCGAG GTGCAGTTCC AGACCTGGCG CACCCTCAAG
CAGAACTACA TCGTGGTTGG CCGCGTCATG GACGCGGGCG AAGGCGCCTA TCGCGTGGAG
TACGAGCTGT TCGATGTCGC GAAGGGCGAG CGCATGCTGG GCCTGGCGAT GACCGCGCGT
GCCAACGCAA TGCGCGATGT TTCGCACCAG ATGGCCGATG CGATCTATGA AAAGATCACT
GGCGTGCGCG GCGCGTTCTG GACCCGCATC GCCTACGTGA CTGCCAGCGG CAAGGGCGGC
GCCATGCGTT ATGCGCTGAT GGTGGCCGAT TCGGATGGCT ACAATCCGCA GACCATCGTA
CGTTCGGCCG AGCCGTTGCT GTCGCCCAAC TGGAGCCCGG ACGGCAAGAA GCTGGCCTAT
GTGAGCTTTG AGCGCGGCAA CTCGTCGATC TACCTGCAGG ACATCGCCAC CGGCGCGCGC
GAACTGGTCT CCAGCTTCCG CGGCATCAAT GGCGCGCCGT CGTTCTCGCC GGATGGCCGT
CGCCTGGCGC TGGCGCTGTC GCGTAGTGGC AACCCGGAAA TTTACGTGAT GGACCTGGGC
AGCAAGCAGC TCACCCAGCT CACCAACCAC TTCGGCATCG ACACCGAGCC GACCTGGGCG
CCGGATGGCG GCAGCATCTA CTTCACCTCT GATCGCGGCG GTCGTCCGCA GATCTACCAG
GTCGCGGCCA GCGGCGGCAG CGCCAACCGT GTCACCTTCC AGGGCAACTA CAACGCCACC
GCCAGTGTGT CGTTCGACGG CAAGAAGATT GCCGTGGCAC AGGGCAGTGG CAATACCTAC
CGCATCGCCA TGATGGACCG CAGCCTGGGT TCGCCCAGCT GGAGCACGCT GTCGCCGGGA
TCTCTGGACG AATCGCCGAG CTTCGCGCCT AACGCTAGCA TGGTGTTGTA CGCGGCGCGC
GAAGGCGGCC GTGGCGTGCT GTACGCCGTC TCTTCCGACG CTCGGGTCCG CCAGCGTCTA
GTGCTGGCCG ACGGCGATGT GAGAGAACCC GCATGGGGGC CTTACCGAAC CGCGCATTAA
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| Protein sequence | MKKPLRWLAA LTVLLLPLSA LAQQQGLTID IVGGSASATP IAVIPMPYQG SDTAPQTDVS
AVVGADLDRS GQFRTLPAAQ IVEKPTRGTE VQFQTWRTLK QNYIVVGRVM DAGEGAYRVE
YELFDVAKGE RMLGLAMTAR ANAMRDVSHQ MADAIYEKIT GVRGAFWTRI AYVTASGKGG
AMRYALMVAD SDGYNPQTIV RSAEPLLSPN WSPDGKKLAY VSFERGNSSI YLQDIATGAR
ELVSSFRGIN GAPSFSPDGR RLALALSRSG NPEIYVMDLG SKQLTQLTNH FGIDTEPTWA
PDGGSIYFTS DRGGRPQIYQ VAASGGSANR VTFQGNYNAT ASVSFDGKKI AVAQGSGNTY
RIAMMDRSLG SPSWSTLSPG SLDESPSFAP NASMVLYAAR EGGRGVLYAV SSDARVRQRL
VLADGDVREP AWGPYRTAH
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