| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01444 |
|---|
| Symbol | |
|---|
| ID | 6306866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 3463604 |
|---|
| End bp | 3465190 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642640614 |
|---|
| Product | amino acid permease |
|---|
| Protein accession | YP_001914469 |
|---|
| Protein GI | 188577540 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAC ACGCTGCAAC CACGCAAGGC AAGTTCCACA AGCGGCTGAG TCTGACCGAC
CTGACCTTTA TCGGGCTGGG TTCGATCTTC GGCTCCGGGT GGTTGTTTTC GGCCAGCCAC
GTGTCCTCGA TTGCAGGGCC GGCCGGCATC GTGTCCTGGA TCCTCGGCGG CATCGCGGTG
CTGCTGCTCG GGCTGGTGTA TTGCGAACTC GGTGCGGCGT TGCCGCGTGC GGGCGGGGTG
GTGCGCTACC CGGAGTATTC GCATGGTGCC TTGCTCGGCG CGCTGACCGG CTTCATCACG
CTGATCGCGT TTTCCAGCTT GATTGCGATC GAAGTGGAAG CGGCGCGGCA ATACGCAGCA
GCCTGGTTCC CGTGGTTGAG TCAAGCAAAT AGTATGCACC CCAGCGTGTG GGGCTGGCTG
GTGCAGTTGG CCTTGCTGGT GCTGTTTTTC CTGCTCAACT ATTTCAGCGT CAAGACGTTC
GCGTTGGCGA ACAACATCGT CAGCATCTTC AAGTTTTTGG TGCCTATCCT GGTGATCGTA
CTGCTGATGC GGCATTTCAA TGCAGATAAT CTCACCGTGC ATGGGGTCGC ACCCTCGGGC
ATGGCCGGCG TGGAAGCGGC GATCTCGGCC GGCGGCATCA TCTTCGCGTA CCTGGGGCTG
ACCCCGATCG TGTCGGTGGC CAGCGAAGTA CGCGATCCAC AGCGCAATAT TCCCATTGCG
CTGATCCTTT CGGTGGCGCT GTCCACGGTG ATTTACGTGC TGCTGCAGCT GGCGTTTCTG
GGCAGCATTC CTGCCGGGCA ACTCGCACAA GGTTGGACTG GCATCGACAA GGCCTTCTCG
CTGCCGTACC ACGACATCGC CTTGGCCTTG GGCATGGCGT GGCTGGCCAC GCTGGTGATC
TGCGACGCGG TAGTCTCGCC AAGCGGCACC GGCAATATCT ACATGAATGC CACGCCGCGC
GTGGTGTACG GCTGGGCGCG GAGCGGTGGG TTTTTGCCGG GCTTGACGCG GGTTCACCCG
GTGTCGGGCA TCCCACGTCC TGCGTTGTGG TTGAGCCTGG GCTTGTCGAT CTTCTGGACG
CTGCCGTTCC CTTCGTGGGA AACGCTGATT GGCGTGGTGT CGGCCGCCTT GGTGCTGAGC
TACGCGGTGG CGCCGGTCGC GGTGGCGGCG TTGCGCCGCA GTGCGCCGGC GTTGCCACGG
CCATTTTTCG TGCGCGGCCT GACGGTGTTG GGGCCGCTGT CGTTCATGGT GGCGGCGTTG
ATCGTGTATT GGTCCACCTG GCCGACCTTG TCGTGGCTGC TCGGCTTGCA GGTGCTCGCA
TTCGCGCTGT ACGTGCTGTA TCGCTTGCCC TCGCGTGAGG GGCGCACCCG CTTGTTGCGG
CAGGTGTGCG CGTCGTTGTG GCTGATCGTG TTCTTCGTGC TGGTGATGCT GGTGTCGTGG
GCCGGCACGT TTGGCGGACA CGGCTGGATC GCGTACCCGT TCGATACGCT GAGCGTGGCA
GCGATTGCGT TCTTCATTTA CCACTGGGGC GCGCGCAGCG GGTTGCGCAG CGACGAGCTG
GCGCTGGAGG AAGACGATGG TGAGTGA
|
|---|
| Protein sequence | MTTHAATTQG KFHKRLSLTD LTFIGLGSIF GSGWLFSASH VSSIAGPAGI VSWILGGIAV
LLLGLVYCEL GAALPRAGGV VRYPEYSHGA LLGALTGFIT LIAFSSLIAI EVEAARQYAA
AWFPWLSQAN SMHPSVWGWL VQLALLVLFF LLNYFSVKTF ALANNIVSIF KFLVPILVIV
LLMRHFNADN LTVHGVAPSG MAGVEAAISA GGIIFAYLGL TPIVSVASEV RDPQRNIPIA
LILSVALSTV IYVLLQLAFL GSIPAGQLAQ GWTGIDKAFS LPYHDIALAL GMAWLATLVI
CDAVVSPSGT GNIYMNATPR VVYGWARSGG FLPGLTRVHP VSGIPRPALW LSLGLSIFWT
LPFPSWETLI GVVSAALVLS YAVAPVAVAA LRRSAPALPR PFFVRGLTVL GPLSFMVAAL
IVYWSTWPTL SWLLGLQVLA FALYVLYRLP SREGRTRLLR QVCASLWLIV FFVLVMLVSW
AGTFGGHGWI AYPFDTLSVA AIAFFIYHWG ARSGLRSDEL ALEEDDGE
|
|---|
| |