Gene PXO_01394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_01394 
SymbolgumD 
ID6306917 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand
Start bp3510874 
End bp3512328 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content61% 
IMG OID642640664 
Productexopolysaccharide xanthan biosynthesis glycosyltransferase GumD 
Protein accessionYP_001914518 
Protein GI188577589 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2148] Sugar transferases involved in lipopolysaccharide synthesis 
TIGRFAM ID[TIGR03023] Undecaprenyl-phosphate glucose phosphotransferase
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.347621 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTTTGG CAGACTTGAG TAGCGAGACT TACACAGCTT CCTCGCCGCG ATTGTTGTCC 
AAATATTCGG CTGCGGCCGA TCTGGTTCTG CGCGTCTTCG ACCTGACCAT GGTTGTGGTG
TGCGGTCTGG TCGCTTACCG AATCGTGTTC GGTTCCTGGG TGCCGGCAGC GCCGTATCGG
CTGGCGATTG CCACCACGCT GCTGTATTCG GTGATCTGCT TTGCGCTGTT CCCGTTGTAC
CGCAGCTGGC GCGGCCGTTG CCTGTTGAGC GAACTGATGG TGCTGGGCGG TGCGTTCGGC
GGTGTCTTCG CGCTGTTTGC GGTCCATGCG TTGATCGTGA AGGTAGGCGA GCAGGTGTCG
CGCGGTTGGA TCGGTCTGTG GTTCGTCGGT GGCCTGGCAT CGCTGGTCGC CGCGCGCACG
GCGCTGCGTG GCTTTTTGAA CCATCTGCGT ACTCAGGGTG TGGACGTCCA GCGTGTGGTG
GTGGTGGGTC TGCGTCACCC GGTGATGAAG ATCAACCACT ACCTGAGCCG CAACTCGTGG
GTTGGTATGA ATCTGGTCGG TTATTTCCGC ACCCCCTACG ACATCGCCGT GACCGAACAG
CGCCAGTCGC TGCCGTGCCT GGGCGAGCCG GACGCGTTGA TCGACTATCT GAAGGAAAAC
CAGGTCGAGC AGGTGTGGAT CTCGCTGCCG CTGGGTGAGC GCGACCATAT CAAGCAGCTG
CTGCAGCGCC TGGATCGTTA CCCGATCAAC GTCAAGCTGG TGCCGGACCT GTTCGATTTC
GGTCTGTTGA ATCAGTCTGG CGAGCAGATC GGCAACGTGC CGGTGATCAA CCTGCGCCAG
GGCGGCGTGG ACCGCGACAA TTACTTCGTG GTGGCCAAGG CGTTGCAGGA CAAGATTCTG
GCTGTCATCG CGCTGCTGGG CCTGTGGCCG CTGATGGCCG CCATTGCAGT CGGCGTCAAG
TTGAGCTCGC CTGGCCCGGT GTTCTTCCGC CAGCGCCGTC ATGGCTTGGG CGGCCGCGAG
TTCTACATGT TCAAGTTCCG CTCGATGCGG GTGCATGACG ACCATGGCAC CACGATCCAG
CAGGCGACCA AGAACGACGC ACGCATCACG CGTTTCGGTG CATTCCTGCG CCGCAGCAGC
CTGGACGAGT TGCCGCAGAT CTTCAACGTG CTGGGCGGCA GCATGTCGAT TGTTGGCCCG
CGTCCGCACG CCGCGCAGCA CAACACGCAC TATGAAAAGC TGATCAACCA CTACATGCAG
CGTCACTACG TCAAGCCGGG TATCACCGGT TGGGCGCAGG TGAACGGCTT CCGTGGCGAA
ACTCCGGAAC TGCGCACCAT GAAGAAGCGT ATCCAGTACG ATCTCGATTA CATCCGTCGT
TGGTCGCTGT GGCTGGATAT CCGCATCATC GTGCTGACCG CAGTGCGCGT GCTCGGACAG
AAGACCGCGT ACTGA
 
Protein sequence
MLLADLSSET YTASSPRLLS KYSAAADLVL RVFDLTMVVV CGLVAYRIVF GSWVPAAPYR 
LAIATTLLYS VICFALFPLY RSWRGRCLLS ELMVLGGAFG GVFALFAVHA LIVKVGEQVS
RGWIGLWFVG GLASLVAART ALRGFLNHLR TQGVDVQRVV VVGLRHPVMK INHYLSRNSW
VGMNLVGYFR TPYDIAVTEQ RQSLPCLGEP DALIDYLKEN QVEQVWISLP LGERDHIKQL
LQRLDRYPIN VKLVPDLFDF GLLNQSGEQI GNVPVINLRQ GGVDRDNYFV VAKALQDKIL
AVIALLGLWP LMAAIAVGVK LSSPGPVFFR QRRHGLGGRE FYMFKFRSMR VHDDHGTTIQ
QATKNDARIT RFGAFLRRSS LDELPQIFNV LGGSMSIVGP RPHAAQHNTH YEKLINHYMQ
RHYVKPGITG WAQVNGFRGE TPELRTMKKR IQYDLDYIRR WSLWLDIRII VLTAVRVLGQ
KTAY