Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_01394 |
Symbol | gumD |
ID | 6306917 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | - |
Start bp | 3510874 |
End bp | 3512328 |
Gene Length | 1455 bp |
Protein Length | 484 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642640664 |
Product | exopolysaccharide xanthan biosynthesis glycosyltransferase GumD |
Protein accession | YP_001914518 |
Protein GI | 188577589 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
TIGRFAM ID | [TIGR03023] Undecaprenyl-phosphate glucose phosphotransferase [TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.347621 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTTTGG CAGACTTGAG TAGCGAGACT TACACAGCTT CCTCGCCGCG ATTGTTGTCC AAATATTCGG CTGCGGCCGA TCTGGTTCTG CGCGTCTTCG ACCTGACCAT GGTTGTGGTG TGCGGTCTGG TCGCTTACCG AATCGTGTTC GGTTCCTGGG TGCCGGCAGC GCCGTATCGG CTGGCGATTG CCACCACGCT GCTGTATTCG GTGATCTGCT TTGCGCTGTT CCCGTTGTAC CGCAGCTGGC GCGGCCGTTG CCTGTTGAGC GAACTGATGG TGCTGGGCGG TGCGTTCGGC GGTGTCTTCG CGCTGTTTGC GGTCCATGCG TTGATCGTGA AGGTAGGCGA GCAGGTGTCG CGCGGTTGGA TCGGTCTGTG GTTCGTCGGT GGCCTGGCAT CGCTGGTCGC CGCGCGCACG GCGCTGCGTG GCTTTTTGAA CCATCTGCGT ACTCAGGGTG TGGACGTCCA GCGTGTGGTG GTGGTGGGTC TGCGTCACCC GGTGATGAAG ATCAACCACT ACCTGAGCCG CAACTCGTGG GTTGGTATGA ATCTGGTCGG TTATTTCCGC ACCCCCTACG ACATCGCCGT GACCGAACAG CGCCAGTCGC TGCCGTGCCT GGGCGAGCCG GACGCGTTGA TCGACTATCT GAAGGAAAAC CAGGTCGAGC AGGTGTGGAT CTCGCTGCCG CTGGGTGAGC GCGACCATAT CAAGCAGCTG CTGCAGCGCC TGGATCGTTA CCCGATCAAC GTCAAGCTGG TGCCGGACCT GTTCGATTTC GGTCTGTTGA ATCAGTCTGG CGAGCAGATC GGCAACGTGC CGGTGATCAA CCTGCGCCAG GGCGGCGTGG ACCGCGACAA TTACTTCGTG GTGGCCAAGG CGTTGCAGGA CAAGATTCTG GCTGTCATCG CGCTGCTGGG CCTGTGGCCG CTGATGGCCG CCATTGCAGT CGGCGTCAAG TTGAGCTCGC CTGGCCCGGT GTTCTTCCGC CAGCGCCGTC ATGGCTTGGG CGGCCGCGAG TTCTACATGT TCAAGTTCCG CTCGATGCGG GTGCATGACG ACCATGGCAC CACGATCCAG CAGGCGACCA AGAACGACGC ACGCATCACG CGTTTCGGTG CATTCCTGCG CCGCAGCAGC CTGGACGAGT TGCCGCAGAT CTTCAACGTG CTGGGCGGCA GCATGTCGAT TGTTGGCCCG CGTCCGCACG CCGCGCAGCA CAACACGCAC TATGAAAAGC TGATCAACCA CTACATGCAG CGTCACTACG TCAAGCCGGG TATCACCGGT TGGGCGCAGG TGAACGGCTT CCGTGGCGAA ACTCCGGAAC TGCGCACCAT GAAGAAGCGT ATCCAGTACG ATCTCGATTA CATCCGTCGT TGGTCGCTGT GGCTGGATAT CCGCATCATC GTGCTGACCG CAGTGCGCGT GCTCGGACAG AAGACCGCGT ACTGA
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Protein sequence | MLLADLSSET YTASSPRLLS KYSAAADLVL RVFDLTMVVV CGLVAYRIVF GSWVPAAPYR LAIATTLLYS VICFALFPLY RSWRGRCLLS ELMVLGGAFG GVFALFAVHA LIVKVGEQVS RGWIGLWFVG GLASLVAART ALRGFLNHLR TQGVDVQRVV VVGLRHPVMK INHYLSRNSW VGMNLVGYFR TPYDIAVTEQ RQSLPCLGEP DALIDYLKEN QVEQVWISLP LGERDHIKQL LQRLDRYPIN VKLVPDLFDF GLLNQSGEQI GNVPVINLRQ GGVDRDNYFV VAKALQDKIL AVIALLGLWP LMAAIAVGVK LSSPGPVFFR QRRHGLGGRE FYMFKFRSMR VHDDHGTTIQ QATKNDARIT RFGAFLRRSS LDELPQIFNV LGGSMSIVGP RPHAAQHNTH YEKLINHYMQ RHYVKPGITG WAQVNGFRGE TPELRTMKKR IQYDLDYIRR WSLWLDIRII VLTAVRVLGQ KTAY
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