| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01340 |
|---|
| Symbol | |
|---|
| ID | 6306972 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 3558406 |
|---|
| End bp | 3561276 |
|---|
| Gene Length | 2871 bp |
|---|
| Protein Length | 956 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642640719 |
|---|
| Product | phage-related tail protein |
|---|
| Protein accession | YP_001914571 |
|---|
| Protein GI | 188577642 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5283] Phage-related tail protein |
|---|
| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.776722 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCCT CTGACAATCT GCGCCTGCAG GTCATCCTGG CCGCCGTCGA CCGCGCCACC
GGCCCGTTCC GGCGCGTGTT GAGCGGTAGC CGCGGCGTTG CCACCGCACT GCGCAACCAG
CGCGATGCGC TGCGCCAACT CAACAGCCAG CACCGCGATA TCGGCTCCTA CCGTGAGCAG
GTCGCGGTGG CGCAGCGTGC CAAGGCCGCG CTCGATGCGC AGCGCCAATC GGTCCGCACG
CTTGCCCAGC AGATCAAGGC CATGGGCACG CCCACCACCG CCATGACGGC GCAGTTCGAA
CGCGCCGTGC GCACCGCACG CGAACTCAAG AGCGCACACG GCGCGCAGGA GGCCGGCCTG
CAGCGTCTGC GCGGCCGGCT GGAAACCGCC GGGATCAGCA CGCGCGAGCT CGTCACGCAC
GAGCGCCGCC TACGCAGCGA GATCGAGAGC ACCAACACTG CCATGCGCGC CCAGCAGCAA
CGCCTGGCAG CAATCGACAC CGCACAGCGA CGCAGCGCCC GCATTCAGAG CGCCGGACTG
CAGGCCAGCG CCTACGGCGC CGGCATGGCG TTTGCAGGGC AACGCGCACT GGGTGCCACC
GCACTGCCGA TCCGCGATGC GATGGAATTC GAGTCAGCGA TGGCCGACGT GCGCAAGGTC
GTGGACTTCA AAACGCCGCA GCAGTTTTTG CAGATGGGCC GCGATGTCGA GAACCTCTCG
ATGCGGTTGC CGATGTTGCC GGCGGAGATT GCCAAGATCG TCGCAGCCGC CGGCCAAGCG
GCCATCCCGC GCCAGGAGCT GGTCCGCTTC GCCGAGGACG CGGCCAAGAT GGGCGTGGCC
TTCGACAGCA GCGCCGAGGA AGCTGGCCAG ACCATGGCCA CCTGGCGCAC CGCTTTCCGC
ATGGGCCAGG CTGAAGTGGT CGTGTTGGCC GACAAGATCA ACTATCTCGG CAACACCGGC
CCGGCCAGCG TCAACAAGAT CAGTGCGGTG GTGAACCGCA TCGGTGCCTT GGGCGAGGTC
GCCGGCCTGC AGAGCGGGCC GTTGGCCGCG TTGGGTGCCA CCGTTGCCGG CATGGGTATC
GAGTCGGAAG TCTCGGCCAC CGGCATCAAG AACATGCTGC TCACCCTTGC CTCGGGCGAG
TCGGCCACCA AGAGCCAGCG CGAGGCGTTC GACAAGCTCG GCATCAAGGC CACCGCCATG
GCCCAGGTCA TGCAGAAGGA TGCCGGCGGG GCAATCATGT CGGTGCTGCA GAAGCTGCGC
GCACTGCCTA AGGCCGAGCA GGCCGCGACG ATGACGCAGC TGTTCGGCCG TGAGTCAATC
GGCGCGATCG CACCGCTGCT GACCAATCTT GAGCTGCTGC AGGGCAACTT CGCCAAGGTG
GCCGATGCAC AGCGCTACGG CGGCTCCATG GAGGCCGAGT ACGCATCGCG TGTAGCTACC
TCGGCCAACT CGCTGCAGCT GCTGAAAAAC ACCGCCGTGG TGGTGTCGCA ATCGATCGGG
CAGACCCTGC TGCCACAGTT CAAGGAACTG ACCGAGCGCA CCGCTGCCGT GGTCGGCCGC
GTCACGACGT GGATCCGCGC CAACCCGGCA CTGGTGGGGA CGATCGCCAA GGTGGCGATC
GGTGCCACCG CGCTGGTCAC CATCCTGGGC GGGCTGCTGG TCGCCGGCGG CGTGGCCGCC
ATGGCGTTCT CGCAGATCCA CGGCGCTGTT GCGCTGCTGT CCGGCGGTGG CGGCTTCGGG
GTGCTGGTGC GCCAGGGGCT GGCGTTCGGC GGCCACGTGC TGCCGCTGCT GGCCAACGGC
GCGCGCCTGC TGCTGCCGCT GCTCGGTGGC GTCAGCCTGC CGGTGCTGGC GATCGGTGCG
GCCGTCGCTG CGGTGGCGCT GCTGGTGTGG AAGTACTGGG GGCCGATCAA GGCGTTCGCG
ATCGGCGTGT GGCAAGGCAT CGTCGAGGTG GCCGCGCCGG TGCTGGCCGA GCTGCAGGCC
GCGCTCGCGC CGCTGGGTCC GCTGTGGGAC ACCGTCGCCG CCGCGATGGG CCAGGCCTGG
GCCTGGGTGA AGCAGCTGCT GACGCCGTTC GAGGCCACCA CCGCGCAGTT GCAAGGTGCA
ACGCAGGCCG GTCGCGGCTT CGGGCAGATC ATCGGTGCTG TGCTGGTCAC CCAGCTGCAG
CTGGCGGTCA AGGCGATTGG CTGGCTGGTG CAGGCGTTTG TGTTTGTGCT GCCGGTGATC
AAGCAGATCC TCGGGGGCGT GTGGCAAACC GTCCAGGGCA CGTGGTCGCT GATCGTGGGC
GTGTTCACCG GCAACAGCGA TCGCATCCGC CAGGGGCTGC TGCAGCTGTG GGCCGGCATC
AACCTGCAGT TGGCCAACTG GCCGGCCCGG ATGCTGCAGG CCGGCGCCGA CATGATCAGC
GGCCTTGTCC ATGGCATCCG CTCCAAGCTC GGTGCGGCAG GCGATGCGAT CGCCAGCGTC
GGCACTGGCG TGGTCGATCG CTTCAAGGGC TTGCTGGGCA TCCACAGCCC CTCGCGCGTG
TTTGCCCAGC TGGGCGACTT CACAATGCAG GGCCTCACCG TGGGCCTGCA GCGCGGCCAG
GCCGCGCCTG TGCAGGCCGT CATGGCGCTC GGTGACCGCA TGCGTGCGGT GGGCGCGGGG
CTGGCCTTGG CGACGGCCAC GGCGCCGCTC GCAGCGATCG ATAGCCGCGC GCCGTTATCC
GCACCAGCGC GGGCACCCGG CGCACCTGCA GGCGGCGCCA GCTACGTCAT CCACGTCCAT
GCCTCGCCCG GCATGGACAC CACCGCACTG GCGCGCGAAG TCGCCCGCCA ACTTGAAGAG
CGCGATCGGC GCACAGCGGC AGCCCGCCGC TCCAGCCTGC GCGACGACTG A
|
|---|
| Protein sequence | MAASDNLRLQ VILAAVDRAT GPFRRVLSGS RGVATALRNQ RDALRQLNSQ HRDIGSYREQ
VAVAQRAKAA LDAQRQSVRT LAQQIKAMGT PTTAMTAQFE RAVRTARELK SAHGAQEAGL
QRLRGRLETA GISTRELVTH ERRLRSEIES TNTAMRAQQQ RLAAIDTAQR RSARIQSAGL
QASAYGAGMA FAGQRALGAT ALPIRDAMEF ESAMADVRKV VDFKTPQQFL QMGRDVENLS
MRLPMLPAEI AKIVAAAGQA AIPRQELVRF AEDAAKMGVA FDSSAEEAGQ TMATWRTAFR
MGQAEVVVLA DKINYLGNTG PASVNKISAV VNRIGALGEV AGLQSGPLAA LGATVAGMGI
ESEVSATGIK NMLLTLASGE SATKSQREAF DKLGIKATAM AQVMQKDAGG AIMSVLQKLR
ALPKAEQAAT MTQLFGRESI GAIAPLLTNL ELLQGNFAKV ADAQRYGGSM EAEYASRVAT
SANSLQLLKN TAVVVSQSIG QTLLPQFKEL TERTAAVVGR VTTWIRANPA LVGTIAKVAI
GATALVTILG GLLVAGGVAA MAFSQIHGAV ALLSGGGGFG VLVRQGLAFG GHVLPLLANG
ARLLLPLLGG VSLPVLAIGA AVAAVALLVW KYWGPIKAFA IGVWQGIVEV AAPVLAELQA
ALAPLGPLWD TVAAAMGQAW AWVKQLLTPF EATTAQLQGA TQAGRGFGQI IGAVLVTQLQ
LAVKAIGWLV QAFVFVLPVI KQILGGVWQT VQGTWSLIVG VFTGNSDRIR QGLLQLWAGI
NLQLANWPAR MLQAGADMIS GLVHGIRSKL GAAGDAIASV GTGVVDRFKG LLGIHSPSRV
FAQLGDFTMQ GLTVGLQRGQ AAPVQAVMAL GDRMRAVGAG LALATATAPL AAIDSRAPLS
APARAPGAPA GGASYVIHVH ASPGMDTTAL AREVARQLEE RDRRTAAARR SSLRDD
|
|---|
| |