| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01238 |
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| Symbol | rnr |
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| ID | 6306370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 2935229 |
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| End bp | 2937757 |
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| Gene Length | 2529 bp |
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| Protein Length | 842 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642640126 |
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| Product | ribonuclease R |
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| Protein accession | YP_001913984 |
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| Protein GI | 188577055 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAAGA AAAACACCCC AGATTCCAAC CGGCCGAGTC GCCGTAAATC CACCAACGCA
GGCGAGTCCA GCACCGCCGA GCAGCAGAAG TTGCCAGGCT GGATGCCCGA CTTCCTGGTC
CGTGCCGCCG CCGGCGCGTC GACCAAGTCC GCCAACAAGC GCGCTGCCGA CAAAGCTTCC
AATGCTGCGT CGCAACCGCC GGCCGCCCTG CCAACGCCGC CGGCCCCGCG CGCACCGCAT
CCGCGCAAGA GTGGCCCACC TGCGCCGCCG CCGGAACGCT TCCAGACCGC CGCGCCGCCC
GCTGCTGCCG AATTCAAGGA TCCGCACGCC GACCGCGAGG CCCTGCGTTA TGCAGAGCCG
ATCGCCAGTC GCGAAGCGAT CCTGCAGCTG CTTGAAGCCT GCGACGGCCC GCAGACCGCT
GAAGAAATTG CCGAGCAGCT CAATCTGAGC GATCGCATCG ATGCACTGGG CAAGCGCCTG
GCCGCGATGG TGCGCGAAGC GCAACTGGTG CAAAACCGCC GCGGCGGCTA TGCGCCGGTG
CAGCAGACCA GCCTGATCGC CGGGGTGGTG ATCGCCAATC CGGAGGGCTT CGGTTTCCTC
AAGCCCGACG GCGGTGGCGA TGACCTGTTC CTGCCGCCGT TCGAGATGCG CAAGGTCATG
CACGGCGACC GCGCGTTGGC CAATGTCACC GGCATCGACC GCCGCGGCCG TCGCGAAGGT
GCGATTGCGC GCGTGCTTGA GCGGGGCATG TCGCGCATGC TGGGGCGCTT TTTCTATGAG
CACGGCGTGG CTTACGTCGA TCCCGATGAC AAGCGCATCC AGCGCAATGT GCAAATCGCC
CCGGACGGTA TCGGCGAGGC GCGCGAAGGC CAGTTGGTGG TTTGCGAACT GATCGCGCCG
CCGGACGCGC GCCGCCCGGC GATCGGCAAG ATCATCGCGG TGCTTGGCGA CAAGCTGACC
CCGTCGCTGG TGGTGGAAAT GGCCATCCAC GGCCACGAAC TTCCGCACGA GTTCCCGCAG
GAAGTGCTGG ACGAAGCGGC GGCTGTGCCG TTGGTGGTCG AGCCGCAGAT GATCGGTGGG
CGCGTGGATC TGCGGCAGAT GCCGCTGGTC ACCATCGACG GCGAAGACGC CAAGGATTTC
GACGACGCGG TGTATTGCGA ACCCAACGCC GACGGCTTCC GTCTGGTGGT GGCGATCGCC
GACGTGTCCA ACTATGTGCG TCCCGGCACG CCGCTGGATG ACGAAGCGCA AAAGCGCGCC
ACCTCGGTGT ATTTCCCGGG ATTCGTGGTG CCGATGCTGC CGGAGACGCT GTCCAACGGC
ATCTGCTCGC TGATGCCCAA GGTCGATCGC ATGTGTTTCG TCTGCGACAT GCAGGTGGGA
GGCGATGGCG AAGTGACCGG CTCGCGTTTT TACGAAGCGG TGATGAACTC GCATGCGCGC
CTGACCTACA ACCAGGTGTG GAAGGCGGTG GGCGAAGGCG ATGCCGACAC CAAGGCCTTC
ATCGGCCCGT TGCTGCCGCA AGTGCAGCGT CTGCATCAGC TGTACCAGGT GCTGTCGAAG
GCGCGTACGC ACCGTGGTGC GATCGAATTC GAAACCTCCG AAGTGCGCTT CGTGCTCGAC
AATACCGGCG AGGTCACCCA GGCCGGCATG CTGGTGCGCA ACGATGCGCA CAAGCTGATC
GAAGAATGCA TGATCGCCGC GAATGTCGAG GCGGCCCGCT ACCTGCTGAG CATGCATGTG
CCGGCGCCGT ACCGTGTGCA CGAGCGGCCG CCGGAGAGCA AGTACGAAGA CCTGCTGGAG
TTCCTCAAGG AATTCCAGCT GAGCCTTCCC GCATGGAGCA AGGTGCGCCC CGGCGATTAC
ACCAAGCTGC TGAAGAAGGT GCGTGCGCGT CCGGACGCGG CGTTGCTGGA ATCGGTGCTG
CTGCGCAGCC AGAGCCTGGC GGTGTATTCG CCGGAAAATA ACGGGCACTT CGGTCTGGCG
TTGGAGGCGT ACGCGCACTT CACCTCGCCG ATCCGGCGTT ACCCGGATCT GCTGGTGCAT
CGCGCGCTCA AGCACGCCTT GACCGGTGCC AGCCCGGAAA AATTCATCTA CACCCCGCGT
CAGATGGCGG CGTTGTCGCT GCAGTGCTCC GAACGCGGCC GGCGTGCCGA CGAAGCCGAG
CGCGAAGTGG ACGAGCGCTA TCGCGCCGCG TGGATGGAAA AGCATGTGGG TGGCCAGTTC
GACGGCGTGA TCAGCGGCGT GACCGGATTC GGTCTGTTCG TGGAGTTGAC GCAGTCCAAG
GTCAATGGCC TGGTGCATGT CACCCAGCTG CCGCAGGACT ATTACCAGTT CGACCCGATC
CGCAAGACGC TCAGTGGCGA ACGCCGTGGT CGCGAATTCC GTCTGGGCGA CCCGGTGCGC
GTGCTGGTGC TCAAGGCCAG CATGGAAGAA CGCAAGATCG ACTTCCGCCT GGCCGAAGAG
GGTGCAGCGC CCGAAGCGCC GCTGCCGCTG CGCGAAACGT CGACCAAGCG CAAGAAGAAA
TCGTCCTGA
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| Protein sequence | MTKKNTPDSN RPSRRKSTNA GESSTAEQQK LPGWMPDFLV RAAAGASTKS ANKRAADKAS
NAASQPPAAL PTPPAPRAPH PRKSGPPAPP PERFQTAAPP AAAEFKDPHA DREALRYAEP
IASREAILQL LEACDGPQTA EEIAEQLNLS DRIDALGKRL AAMVREAQLV QNRRGGYAPV
QQTSLIAGVV IANPEGFGFL KPDGGGDDLF LPPFEMRKVM HGDRALANVT GIDRRGRREG
AIARVLERGM SRMLGRFFYE HGVAYVDPDD KRIQRNVQIA PDGIGEAREG QLVVCELIAP
PDARRPAIGK IIAVLGDKLT PSLVVEMAIH GHELPHEFPQ EVLDEAAAVP LVVEPQMIGG
RVDLRQMPLV TIDGEDAKDF DDAVYCEPNA DGFRLVVAIA DVSNYVRPGT PLDDEAQKRA
TSVYFPGFVV PMLPETLSNG ICSLMPKVDR MCFVCDMQVG GDGEVTGSRF YEAVMNSHAR
LTYNQVWKAV GEGDADTKAF IGPLLPQVQR LHQLYQVLSK ARTHRGAIEF ETSEVRFVLD
NTGEVTQAGM LVRNDAHKLI EECMIAANVE AARYLLSMHV PAPYRVHERP PESKYEDLLE
FLKEFQLSLP AWSKVRPGDY TKLLKKVRAR PDAALLESVL LRSQSLAVYS PENNGHFGLA
LEAYAHFTSP IRRYPDLLVH RALKHALTGA SPEKFIYTPR QMAALSLQCS ERGRRADEAE
REVDERYRAA WMEKHVGGQF DGVISGVTGF GLFVELTQSK VNGLVHVTQL PQDYYQFDPI
RKTLSGERRG REFRLGDPVR VLVLKASMEE RKIDFRLAEE GAAPEAPLPL RETSTKRKKK
SS
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