Gene PXO_01171 details

Gene Information

• Locus tag: PXO_01171
• Symbol: dxs
• ID: 6306438
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 3003719
• End bp: 3005635
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642640194
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001914051
• Protein GI: 188577122
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 0.994289
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCGACA CCACCCGCTA TCCGCGCCTG TCACGCATCC ACACTCCCGA CGATCTGCGC 
CGCTTCGACG AAGCCGAGCT GACCGTGATC GCCGAAGAAC TGCGTTCCTA CCTGATCGAA 
TCGGTGGGCA AGAGCGGCGG GCATTTCGCG GCCGGCCTGG GCGTGATCGA ACTGACCGTT 
GCCCTGCACT ACCTGTATCA AACCCCGGTC GATCAGTTGG TGTGGGACGT CGGGCATCAG 
ACCTATCCGC ACAAGATCCT CACCGGCCGC CGCGACCAGA TCCACACGGT CAAGCAGAAG 
GACGGCGTGG CGCCATTTCC CAAGCGCGAA GAGAGCGTGT ACGACACGTT TGGCGTGGGT 
CATTCGTCGA CCTCGATCTC GGCTGCGCTC GGCATGGCCA TCGCCGCGCA GCGCAATGGC 
GACGACCGCA AGGTGGTCGC GGTGATCGGC GACGGCGCGA TGACGGCCGG CATGGTCTAC 
GAGGCGCTCA ACCACGCCGG CGGCATGGAC CCGGAACCGA ACCTGCTGGT GATCCTCAAC 
GACAACCGCA TGTCGATCTC CGAAGCGGTG GGTGGGCTGA CCAAGATGTT GGGCCGCGCC 
AGCGGCAGCC GCACGCTCAA TGCGATCCGC GAAGGCGGCA AGAAGATCCT GGGCGACAAG 
AAGAACAACC CCACTGCGCG CTTCGTGCGG CGCTGGGAGG AACATTGGAA AGGCATGTTC 
GTGCCGTCCA CGCTGTTTGA GGAAATGGGC TTCCATTACA CCGGCCCGAT CGATGGCCAC 
GACCTGCCCA GACTGGTCGG CGCGCTGAAA ACCCTGCAGA CACTCAAGGG CCCGCAGCTG 
CTGCACGTCA TCACCACCAA GGGCAAAGGC TACGAGTTGG CCGAAGGCGA CCAGATCGGT 
TACCACGCGG TCAGCCCGTT CGACCCGAGC AAGGGCCTGG TGGCCAAGGG CGGCGCCAAG 
AAGCCGACCT ACACCGATGT GTTCAGCGAC TGGGTCTGCG ACATGGCCGC CGCCGAACCC 
AAGCTGCTGG TGATCACCCC GGCGATGCGC GAAGGTTCGG GCCTGGTGCG CTTCAGCAAG 
GAATACCCGC AGCGCTATTT CGATGTGGCG ATTGCCGAGC AGCATGCGGT GACGCTGGCC 
GCCGGCATGG CGACCCAGGG CGCCAAGCCG GTCGTGGCGA TCTATTCAAC CTTCCTGCAA 
CGCGGTTACG ACCAGCTCGT GCACGACGTG GCAGTACAGC AGCTGGATGT GCTGTTTGCG 
ATCGATCGCG GCGGCGTGGT CGGCCCGGAC GGCGCGACTC ATGCCGGCAA TCTGGACCTG 
AGCTTCCTGC GCTGCGTGCC GCACATGGTG GTGATGGCGC CGGCCGATGA GGCCGAATGC 
CGTCAGATGC TGAGCACCGG CATGCAATAC CAGGGCCCGG CTGCGGTGCG CTACCCGCGC 
GGCACCGGCC CGGGCGCAGC ATTGGACAGC TCGCTCGCTA CCTTGCCGAT CGGCAAGGCG 
CAGCTGCGCC ACAGCGGCAC CCGTATCGCC CTGCTCGGCT TCGGCGCGAC CGTGGATGCG 
GCCGAGGCAG TGGGCCGTGA CCTGGGCCTG ACCGTGGTCA ACATGCGCTT CGTCAAACCG 
CTCGACAAGG CGATGCTGCT GGAGCTTGCA AAGACCCACG AAGGCTTCGT CACCATCGAA 
GACAACGTGG TTGCCGGCGG CGCCGGTTCC GGCGTGTCGG AACTGCTCAA TGCCGAAGCC 
ATTACCTTGC CGATGCTGCA CCTGGGCCTG CCAGACAGCT TCCAGCATCA CGCCAGCCGC 
GAAGACCTGC TTGCAGAGGC CGGTATCGAC CAAGCCGGCA TTCGCACTGC CGTGCTCAAG 
CGCTGGCCGC AGTTGATGAC CGGCAAGACG CCCTCGTTGA ATGCTGCGGC CGGCTGA 

 

Protein sequence

MIDTTRYPRL SRIHTPDDLR RFDEAELTVI AEELRSYLIE SVGKSGGHFA AGLGVIELTV 
ALHYLYQTPV DQLVWDVGHQ TYPHKILTGR RDQIHTVKQK DGVAPFPKRE ESVYDTFGVG 
HSSTSISAAL GMAIAAQRNG DDRKVVAVIG DGAMTAGMVY EALNHAGGMD PEPNLLVILN 
DNRMSISEAV GGLTKMLGRA SGSRTLNAIR EGGKKILGDK KNNPTARFVR RWEEHWKGMF 
VPSTLFEEMG FHYTGPIDGH DLPRLVGALK TLQTLKGPQL LHVITTKGKG YELAEGDQIG 
YHAVSPFDPS KGLVAKGGAK KPTYTDVFSD WVCDMAAAEP KLLVITPAMR EGSGLVRFSK 
EYPQRYFDVA IAEQHAVTLA AGMATQGAKP VVAIYSTFLQ RGYDQLVHDV AVQQLDVLFA 
IDRGGVVGPD GATHAGNLDL SFLRCVPHMV VMAPADEAEC RQMLSTGMQY QGPAAVRYPR 
GTGPGAALDS SLATLPIGKA QLRHSGTRIA LLGFGATVDA AEAVGRDLGL TVVNMRFVKP 
LDKAMLLELA KTHEGFVTIE DNVVAGGAGS GVSELLNAEA ITLPMLHLGL PDSFQHHASR 
EDLLAEAGID QAGIRTAVLK RWPQLMTGKT PSLNAAAG