| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01145 |
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| Symbol | dapE |
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| ID | 6306467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 3031244 |
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| End bp | 3032374 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642640221 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001914078 |
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| Protein GI | 188577149 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0346694 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGATG TGCTGGATCT GACCTGCGAT CTGATTGCAC GCGCCTCGGT GACTCCCGAG
GATGCTGGCT GCCAGGCACT GCTTGCAGGG CGCTTGACTG CCGCGGGCTT CGCCTGCGAA
CACCTGCGCC TGGGCGAGGT CGACAATCTG TGGGCAACGC ATGGCAGCGG CGCGCCGGTG
CTGGTGTTGC TGGGGCATAC CGATGTGGTA CCGCCGGGCC CGCGCGAGGC CTGGACCAGC
GATCCGTTCG ATCCGCAGAT CCGCGACGGC GTGCTGTACG GTCGTGGCGT GGCTGATATG
AAAGGCAGCG TCGCCGCGTT CGTCGTCGCC GCGGAGCAGT TCGTCGCCGC GCATCGAGCG
CATGCCGGCA CGCTGGCAGT GTTGCTGACT TCGGACGAGG AGGGCGATGC CATCGATGGC
GTGCGCCGGG TCGCCAACCT CTTTCGCGAA CGCGGACAGG CGATCGATTG GTGCATTACC
GGCGAGCCAT CGTCCACCGA GCGCTTGGGC GATCTGTTGC GCGTTGGACG TCGCGGCAGC
TTGTCCGGCA CGCTCACCGT CAAGGGGGTG CAGGGGCATG TGGCGTACCC ACACAAGGCG
CGCAACCCGA TCCATCTGGC AGCGCCTGCG CTGGCCGAAC TGGTCGCGCG GCAATGGGAC
GATGGCTTCG AAAGCTTCCC GCCGACCAGT CTGCAAGTCT CCAATATCCA TGCCGGCACT
GGCGCCAATA ACGTGATTCC CGGCGAGCTG CAGGTGGCCT TCAATCTGCG CTATACGCCG
CACTGGGACG CGCCGCGCCT GGAGACGGAA ATCACCGCGC TGCTCGATCG GCATGCGCTG
GACTACGCGC TGCGCTGGCA CCGCAGCGGC GAGCCGTTCT ACACCCCGGA AGGGCGCTTG
CGTAGCGTCG CGCGTGAGGT GTTGGGCGCG TTTGCCGGTG CGCCACCGGA AGAGAGCACC
GGCGGCGGCA CCTCCGACGC GCGCTTCATC GCGCCATTGG GCGCGCAGTG CATCGAAGTC
GGCCCGGTCA ACGCCAGCAT TCATCAGGTC GACGAGCATG TGCGCGTTGC CGATCTGCAA
GCACTGCCAG CGCTGTATCG CACACTGATC GAGCGCTTGC TGGTCGAGTG A
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| Protein sequence | MNDVLDLTCD LIARASVTPE DAGCQALLAG RLTAAGFACE HLRLGEVDNL WATHGSGAPV
LVLLGHTDVV PPGPREAWTS DPFDPQIRDG VLYGRGVADM KGSVAAFVVA AEQFVAAHRA
HAGTLAVLLT SDEEGDAIDG VRRVANLFRE RGQAIDWCIT GEPSSTERLG DLLRVGRRGS
LSGTLTVKGV QGHVAYPHKA RNPIHLAAPA LAELVARQWD DGFESFPPTS LQVSNIHAGT
GANNVIPGEL QVAFNLRYTP HWDAPRLETE ITALLDRHAL DYALRWHRSG EPFYTPEGRL
RSVAREVLGA FAGAPPEEST GGGTSDARFI APLGAQCIEV GPVNASIHQV DEHVRVADLQ
ALPALYRTLI ERLLVE
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