| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01136 |
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| Symbol | fasD |
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| ID | 6306476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 3039930 |
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| End bp | 3042281 |
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| Gene Length | 2352 bp |
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| Protein Length | 783 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642640230 |
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| Product | outer membrane usher protein FasD |
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| Protein accession | YP_001914087 |
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| Protein GI | 188577158 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0354539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCTGC TTGCGACCGC CACCTGCCTG GGCAGCGCCG CAGCCGGCGA TCTGGCCGAT
GTGACATCGC TCCCCGATCA GCCGCCGCCA GGCGCCACGC CACAGCCGCA AACGCTGTAT
CTGGACGTCA CCGTGAATCA GGCCGACCGC GGCCTGGCGC CGTTCGAACT TGTCGATGGC
CGGCTGCGCG GCTCGGTGGA AACCCTGCGC AAACTCGGCT TTATTCTGGC CGACCGCGCG
CCTGGCGCGT TGGTCGATCT GGACCGCCTG CCCGATGTAG AAGTGCGTTA CGACGCCGCG
CTACAGCGGC TTGCGCTGCA GGTGCCACTG GCACAGCTGT CGTTGTCCAC CACGGTGTTG
AAAACCGAAC AAGTGGCCCC GCCCAGCGCC ACTGCCTCGC CGGGCCTGCT GCTCAATTAC
GACCTGTATG CCACCCGCAA TGCCGGCGCC AGCAGCGCGT CGCTGGCGAC CGAACTGCGT
GCCTTCGGCA TCGGCCGCGG CATGGTCGAC ACCACTGCAA TTTTTCTTGC TTACGACCGC
CCGCAGGACG AACGCTGGCG GACCGAAGCG GTGCGCCTGG ACAGCGCCTG GCAGATGGAT
TTTCCGGACA GCGCCACCAG CCTCAGCGTG GGCGATTTCT ATAGCGGCTT TGTCGACTGG
AGCCGCTCGA TCCGCCTGGG CGGCGTGCAG ATCGGCCGCA ATTACGCCTT GCAGCCGTAT
CGCGTGCTGA CGCCGACGCC GAGCTTTCTC GGCGAAGCGG CGGTGCCTTC CACCGTGGAG
CTGTACGTGG ACGGGCTGCG CCAATACAGC GGCCAGGTGC CGGCCGGCCC GTTTCAGCTG
GCCGCGCAAC CGGGCATCAG CGGCACTGGC CAGGCGCAGA TCGTGGTGAC CGATGCATTC
GGCCGCGTGC GTAGGTTGGA TTTCGCCTTC TATGGCACAC CACAGCTGCT GGCGCGCGGC
ATTTCCGAAT GGTCGGCCGG CATTGGCCAT CTGCGCCGCG AATACGGTGT GCGCTCGTTT
TCCTACGATC CACGTCGTGT GGCAACCGCC ACCTTCCGCA ACGGCCTGCG CGACGATTTC
ACGATCGAAG CGCATGCCGA AACCGGCGGT AGCGTGATCA ATGCCGGCGT AGGCGGCGTG
TGGTTGCTTG GCGTGGGCGG TGTGTTCAAC GCCGCCTACG CGCACAGCCG GATGGACGCA
CTGCGCGGCG GCCAGTACGT GCTGGGCTAC GGCTGGAACA ACCGGCGTTT CAACGTCAAT
CTGGGCACCC AGCGCACCCA TGGCGATTAC CGCGACCTGG GCGCATTGCA GGGCGCATTG
CCTGCGCGCG TCAGCGACCG TGCAGCGCTC GGCGTCAACG TCGGCCAGAT CGGTTCACTC
GGCACAAGTT ATGTGCGGCT GAGCTATCCG CAAGGCGAAA CCTCGCGCTA TGCCAGCGTG
TTCTGGTCGC GCAACTTCGG GCGCAACTGG GCCGCCAATC TGTCGGGCAA TCAGAATCTG
GATGTCTCCA GCGATCGCAG CCTGTACCTG TCGGTGTCGA CCACGCTTGG CGGATTACGT
CAGGCCAGCG CCTCGATGCA GCGCAACGGT AACCGCACCG GCTTTGTGGC CGATATCAGC
CAACCACTGC CCGGTGATGG CGATCTGGGT GGCATCGGTT GGCGCCTGCA GGGCCGTGCC
GGTGACGATG CCAGCGGCGG GCTGGCCGAA CTGGGCTGGT TGAATCGGGT GGGCCGTTAC
AACCTCGGCG CAGCAACCCA GGACGGCGAC AGTTTCGGCT ATGCCAGCGC CAGCGGCAGC
CTGGTGTGGA TGAACGGCCG CACCTTCGCC GCGCGCGACA TCCAGGACGC GTTCGCGGTG
GTCTCCACCG ACGGCCAGCC TGGCATTCCG GTGCGGCTGG AGAACCGCTT GATCGGGGTC
ACCGATGCGC ACGGCACCCT GCTGGTGACA CCATTGCAGT CCTGGCAGCG CAATCAGTTA
TCCATCGATA CCTTGACCCT GCCGGCGGAC CTGCGCGTGG ACCGTGTCGA CACGACGGTG
ACGCCGCGCC AGCGATCCGG TGTGGCGGTG CACTTCGGCA TCACCCGCGT GCGCGCCGCC
ATCATCGTGC TGCACGATGC GCAGGGCGCG CCGCTGCCAG TTGGCAGCGT GGTGCGGCGC
GACGGCAGTT CCGAACGCGT GGTGGTCGGC TACGACGGCG AAACCTACCT GGACAATCTG
CAAGGCGACA ATCGCATTCT GGTGGAACTG CCCCAAGGCC GTTGCGTCGC GCAGTTCGCG
TATCCGGTCG ACCCGGGCGG CATTCCGCGC GTCGGTCCAC TGCCGTGCAT GCTTGAGCAA
ACAACGCCAT GA
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| Protein sequence | MTLLATATCL GSAAAGDLAD VTSLPDQPPP GATPQPQTLY LDVTVNQADR GLAPFELVDG
RLRGSVETLR KLGFILADRA PGALVDLDRL PDVEVRYDAA LQRLALQVPL AQLSLSTTVL
KTEQVAPPSA TASPGLLLNY DLYATRNAGA SSASLATELR AFGIGRGMVD TTAIFLAYDR
PQDERWRTEA VRLDSAWQMD FPDSATSLSV GDFYSGFVDW SRSIRLGGVQ IGRNYALQPY
RVLTPTPSFL GEAAVPSTVE LYVDGLRQYS GQVPAGPFQL AAQPGISGTG QAQIVVTDAF
GRVRRLDFAF YGTPQLLARG ISEWSAGIGH LRREYGVRSF SYDPRRVATA TFRNGLRDDF
TIEAHAETGG SVINAGVGGV WLLGVGGVFN AAYAHSRMDA LRGGQYVLGY GWNNRRFNVN
LGTQRTHGDY RDLGALQGAL PARVSDRAAL GVNVGQIGSL GTSYVRLSYP QGETSRYASV
FWSRNFGRNW AANLSGNQNL DVSSDRSLYL SVSTTLGGLR QASASMQRNG NRTGFVADIS
QPLPGDGDLG GIGWRLQGRA GDDASGGLAE LGWLNRVGRY NLGAATQDGD SFGYASASGS
LVWMNGRTFA ARDIQDAFAV VSTDGQPGIP VRLENRLIGV TDAHGTLLVT PLQSWQRNQL
SIDTLTLPAD LRVDRVDTTV TPRQRSGVAV HFGITRVRAA IIVLHDAQGA PLPVGSVVRR
DGSSERVVVG YDGETYLDNL QGDNRILVEL PQGRCVAQFA YPVDPGGIPR VGPLPCMLEQ
TTP
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