| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00967 |
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| Symbol | |
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| ID | 6306104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 2638229 |
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| End bp | 2641201 |
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| Gene Length | 2973 bp |
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| Protein Length | 990 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642639867 |
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| Product | Putative signal protein with GGDEF domain |
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| Protein accession | YP_001913727 |
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| Protein GI | 188576798 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0579558 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAAGC TGCATATCCT GTTCGCCCTT TCTGCGCCGC AGCGCATCGC GTTCTGGGTC
TGGCGCGGGC TGTTCGTGGT CGCATTGGCA GCGGCGGGCA TCGGAAGTAC GCGCGCGCAG
AGCTACAGCT TCCGCGATTA CGCGCAGAGC GATGGTCTGC AAGGCATGAG CATCACCGGC
CTGGTCGAAG ACCGCCGCGG TGTGGTGTGG GTGGCGACCG AGCTGGCCTT GCACCGTTTC
GAGCGTGATC GTTTCATTCC GGTCGGCCAG GATCAGGGGC TGGATGCGCG CTATACGCGC
GCGCTGACGC TGGATCATGC CGGGCGCCTG TGGGTGGCCA CCGCTAACGG CGTCTTCGTG
CGCAACGGCG AGCAGTTCGT GCAAGTGCTG GATCACGGCA AACGCATCCG TGCCGACGCC
GGCAATGTCA TCGCGGCCTA CCGCACCGGG GTTGCGGTGG CCAGCAACGG CGCGCTGCTG
GCACTGACGC CAGAGGCCGA CGGCCATTGG CAGGTCCAAC CGCTGCCGGT GCGCACCGCC
GACGGCAAAC TGCGTGAGCC GGGTACGACG CTGTTGGCAG ATGGGCAGTT CCTTTGGGTA
CCGTGCGATG GCGGAGTCTG TCGCCTGGAT GCGCGCGGCA CTGTGGTCGA AGCGCTGTCC
GAAGCCGATG GTGTGCCGGC GCGACGCTGG CGGGTGATCT TCCGCGAACG GGGCGGACGC
TTGTGGTTGC GCGGCGGCGG CACGATCGTC TCGCGCGCCC CCGGCGGCGC CCGTTTTACC
GAACACCCGG CCAATCCGGA AAACAGTTTC AATACGCTGT CCGGCTCGAC CACGATGGTG
GAAGACGCGC GTGGACGCAT GCTGACCCGG TCCGATCATG GCCTGGTGCG TTGGGAAGGC
ACGCATTGGA CCGATATCGG CGCCGACCAG GGCCTCCAGC TGAACGCCCT GGTCGGCCCG
TTGCTGCTGC AAAGCAACGG CACGCTATGG CTCGGCACCC GCGGAATGGG CCTGCAGCGG
GTGTTGGGCT ACGACAGCAT CGAGCACCTG ACCGAAGCGC AAGGCATGCC GCCAGCGCCG
ACCTGGACCA TGCAGCGCCT ACCCAACGGC ATGCTCGCCG TCGGTGCCGA CGGTGGCGCC
AGCTTGTTGA AGCGGAATGC CACGCATGCG CAGCCATGGC TGCTGGAAGA CGGTGCGGTG
TTGTCGCAGG CACTGAACAT CACTGTGGCG CCCGATGGTG CGGCCTGGGT GTCGTATTAC
TCCGGCGCCA TTGCCCGGCG CGATCCGCTC ACCGGGGTGA CCAGCCGCGT GATGGATTTG
CCCATCGCCG GCTACAAATT GCTGTTCGAC AAGGCAGGGA CGGTGTGGAT CGCGACACCG
CGCGGCCTGG TCCGCGGCCA GGCCGCCCCG CCCTATGCAC TGGCCCCCGA CCCGGCAATG
GAAGGCAAGT TCATCGGCGA TATCGATTTC GATCGCCAGG GCCGGCTGTG GGCGGCCACC
CGCGATGGCC TGTATCGCCG CAACGGCACT ACCTGGGTGA AGATTCCCGT GCGGGGCAGC
TTGCCCAGCC AGGACATGCT CCAGATCGAC TTCGCGCCCA ATGGCGAAAT CTGGTTGTCG
CTGCGCGACA CCGGCCTGTG GCACGGCCGC CTGCAAGGCG ACGGCAGCCT GCTGTTGCAG
GCGGTGGACG ACCCGCTGAT TTCCAGAATC ATGCCCTACA TCCTGCGCCA CGACCGCAAG
GGGCGGTTGT GGGTAGGTAG CAGCCAGGGG CTGGATCTGT ACCAGAACGG CCATTGGTCG
CGGATCACCC GCGCCGAGGG GCTACTATGG GACGACATGT CGTCCAACGC CTTTCTGGAA
GACGACGACG GCAGCATCTG GATCGGCAGC AGCCGGGGAC TCAGCCATCT GCGCGACCCG
CAACGGCTGT TCGCCGCGCA ACCGCTGCGG GTCGACATCG CCGAGGTCCG GCGTGGTGCC
CAGATCGTGC ATTCCGGCGC GTCGATCGCC TGGTCGGAAA CGCCGCTGGA GATTGAGCTG
AGCACGCCCG GCGTGGAAGG CGGCGCCAAC CGCATCAGCT TCCGCTACCG GGTCCAGGCG
CGCTGGACCA CGTCCTCACT CAGCCACCTC ACCTATCCGC TGCTGCCACC GGGCAACTAC
ACGCTGGAGG TGCAGGCGCT GGATGCCTAT CAGCGCAGTG CCAGCCCGAT CGCGCGCTTT
CAGTTCGTCA TACGTCCACC ATGGTGGCGC AGCATCGCTG CCATCGCCGG CTACCTGCTG
TTGGCCGTCG TGGCGGTGAT CGCGCTGCTG CGTTGGCGCA CCGCCAAACT GCTGCGGCGC
AAACACGAGC TGGAGCAACT GGTAGCCGAG CGCACCGCCG AGCTGGAACA GGACAAGCGC
GATCTGGAAG CAGCGCGCGC CGAACTCTCG CTCAAAGCCA CCCACGACGA ACTCACCGGC
CTGCTTAACC GCGCCGGCAT CCTGGCCGCG CTGCGCGAAA TGCTGCTGCA CGCCGCGCGC
AGCGGGCGGC CGCTGGCGGT GGTGTTGATC GATCTGGATC ACTTTAAACT GGTCAACGAT
CAACATGGCC ACCTGGCCGG CGACGCCGTG CTGGCCGGGG TCGGCCACCG CATGGATACG
CTGGTGCGCG GCGACGACCG CATCGGCCGT TACGGCGGCG AAGAATTGCT GGCGCTGCTG
CCAGGGCTGA CGCCGGGTGC CACGCATCGC CTGGACGCCA TGCACCGCGG CATCTGCGGC
GACTACCCCG TCGACGACGG CTGGCTGCAC GTCACCTGCT CGATCGGTGT AGCCTGGTTC
CAGGCTGGCG AAACGCTGGA GCAACTGCTG GCACGCGCCG ACGCCGCGTT GTACCGCGCC
AAGCGCAGCG GCCGCAATCG GATCGATTAC GACCACGTGC CCCTGGATCG TCTTGGGCAG
GTCTTGCCGC TGGACCCGCA GCAGCGCGAG TGA
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| Protein sequence | MFKLHILFAL SAPQRIAFWV WRGLFVVALA AAGIGSTRAQ SYSFRDYAQS DGLQGMSITG
LVEDRRGVVW VATELALHRF ERDRFIPVGQ DQGLDARYTR ALTLDHAGRL WVATANGVFV
RNGEQFVQVL DHGKRIRADA GNVIAAYRTG VAVASNGALL ALTPEADGHW QVQPLPVRTA
DGKLREPGTT LLADGQFLWV PCDGGVCRLD ARGTVVEALS EADGVPARRW RVIFRERGGR
LWLRGGGTIV SRAPGGARFT EHPANPENSF NTLSGSTTMV EDARGRMLTR SDHGLVRWEG
THWTDIGADQ GLQLNALVGP LLLQSNGTLW LGTRGMGLQR VLGYDSIEHL TEAQGMPPAP
TWTMQRLPNG MLAVGADGGA SLLKRNATHA QPWLLEDGAV LSQALNITVA PDGAAWVSYY
SGAIARRDPL TGVTSRVMDL PIAGYKLLFD KAGTVWIATP RGLVRGQAAP PYALAPDPAM
EGKFIGDIDF DRQGRLWAAT RDGLYRRNGT TWVKIPVRGS LPSQDMLQID FAPNGEIWLS
LRDTGLWHGR LQGDGSLLLQ AVDDPLISRI MPYILRHDRK GRLWVGSSQG LDLYQNGHWS
RITRAEGLLW DDMSSNAFLE DDDGSIWIGS SRGLSHLRDP QRLFAAQPLR VDIAEVRRGA
QIVHSGASIA WSETPLEIEL STPGVEGGAN RISFRYRVQA RWTTSSLSHL TYPLLPPGNY
TLEVQALDAY QRSASPIARF QFVIRPPWWR SIAAIAGYLL LAVVAVIALL RWRTAKLLRR
KHELEQLVAE RTAELEQDKR DLEAARAELS LKATHDELTG LLNRAGILAA LREMLLHAAR
SGRPLAVVLI DLDHFKLVND QHGHLAGDAV LAGVGHRMDT LVRGDDRIGR YGGEELLALL
PGLTPGATHR LDAMHRGICG DYPVDDGWLH VTCSIGVAWF QAGETLEQLL ARADAALYRA
KRSGRNRIDY DHVPLDRLGQ VLPLDPQQRE
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