| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00965 |
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| Symbol | |
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| ID | 6306106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 2641560 |
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| End bp | 2644481 |
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| Gene Length | 2922 bp |
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| Protein Length | 973 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642639869 |
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| Product | Putative signal protein with GGDEF domain |
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| Protein accession | YP_001913729 |
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| Protein GI | 188576800 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.051643 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGGTTTC AGCAACGCCA ATGGAGGTCG TCGCACCGGC GTGCACCGTT TGCCGTGGTG
TTGCTGTTGG CGTTGCTGTC GTTGGCGGAT CTGGCAGGCG CGCAGAGCAT CAGCATCCGG
CGGTATGCCC ACGACCAGGG CCTGCTCGGT CTTGCCGGCA CCTGTCTGCT GCAGACCCGC
GCCACCTTGC TGTGGGTGTG CACCGAGAGC GGGCTGTATC GCTATAACGG GCGCACGTTT
CAACAAGTGC CGCTGGATGG TTTGCGCAAC GAGCCCATCA GTTCGATGAC CGAATCCGCC
GATGGGCGGT TGTGGGTGGC CGGCTTTCAG AGCGTGTTCG TCGGCGACGA ACACGGGTTC
CGCAAACTGG CGCCGGACGA AGCCCAGCAC CTGCAGGACA AAATCCAACT TGCCGGCCTC
CCCTGGGGCA CGGTGCTGCT CAATGAGGGC AGTCTGGAAA TCCTTCAGCC ACGCGCCAAC
GGGCACTGGC AGAGCCAACC GTTGCTGGAC ACCGCAACCC GCGTACGCGT TCCCGAGTTG
TCCAAGGTGT TCAGCTTGTC GGTGGATGGC AACACGCTGT GGGCGGGTTG CGCTCGCAAG
CTGTGCGCCA TCGATGCGCA GCACAAGGTG CAGGTCTTCG GACCGGAACG TGGTGTGCCG
GAAGACCGTT GGTCCAGCGT GTTGCGCGAC CAAGACGGCG GGTTGTGGGT GCGCGGTGCC
GGCACCCTGC TCTATCGTGC GCGCGGCGCC GACACCTTCA GCGTTCGTCC GCTGCCGCTG
CTGGATGGCA GTACGGTCGG TCGGCAGGCG CCGCTGGTGA TGGACCGCGA GGGACGCGTG
CTGGTGCGTC GCAACGACGG CCTGGCGCGC TGGGAAAACG GCCGCTGGCG CACGTTTGGC
ACCGAGAACG GCCTGCCACC GGCCAGCAGC GATGCGATCC TGGTGGACCG CGAAGGCGAT
GTCTGGATGA CCGTCGACGG CGAAGGACTG GTGCGCTGGG CCGGCTACGA ATGGATCGAA
AACTGGGACG CTTCGCAAGG CATGCCGGCC GCGCCGACCT GGTCGATCGC CCGCGACGGG
CAAGGCGCGT TGCTGGTCGG GAATGAACAC GGCATCGGTC GCCAGACCGA TCCGGATGGG
CGCTTCGTCC CGGCCCTGCA CAGCGCCGGC ATCCAGATCG TGGGCATGGA GCGCAGCCAG
GACGGCAGTC TGTGGACACT CAGTTCGGCC GGTTTCTTGC GCCGCACCTG GCCGGACGGA
CACAGCGCGG AAATCGCCAA GCTGCCGCGC ACTGGGCGTC GCCTGTTGAT CGACCGCCAG
GGCCGGCTGT GGATGCTCAG TGCCGGTGGC CTGTTCGTGA TCGAGCACCC GCTCGACGGC
GGCAGCATGC AGGCCGTGGC CGACATGCCC GCCATCGCCT ACACCGATGT CCAGCAAACC
GCCGACGGAA CGCTGTGGGT CTCCACCTCC AATGGCTTGT TCCGGCTGCA GGATGGGCAC
TGGTCCAACG TCAAAGTCCA GGTCAACGGC GGCGCGCCCG AGCCATGGAT CAGCAAGTTC
CATATCAGCG ACAGCGGTGA GGTCTGGCTG GCGTTCTATC GCCCCGGCCT GTGGCACGGC
ATGTTGCTGC GCGACGGCCT GGACCTGCAA GAAATCAGCG ACGAAGCGCT GCGCGATGTC
GGCGTGTATC TGCTGTGCGG CGACAGCGCC GGCCGGGTCT GGGTGGGCCA TACACGTGGC
GTGGAGGTCT ACGACGGTGA GCATTGGGCG CATCTGTCGC AGTCGCAGGG GTTGATCTGG
GAGGACATCT CCGAGGCGGC GTTTGCCGAA GATCCGGATG GTTCGATCTG GATCGGCACC
GCACGCGGGG TGAGCCACCT GAGCGACCCG GCGCACCTGT TCGACGAGCG CCAGCCGAGC
GTACGCATCG ACAGCCTCAG CCGCGGCGGG ATGCCGGTGC AGCGCGGGCA ACTGCTGGGC
TGGAGCGACA AACCGCTGCA TATCGAGCTG TCGACGATGG AGGTCTACGA CGACCCCAGC
CGCCTGACGG TGCGTTATCG CCTGCTCGGC CTGCACGACG AATGGATTCA GAGCGACAAC
CTGTCCATCG ACCAGCCCCC CCTGCCCTCC GGGCATTTCC GCCTGCAGGT CCAGGTGCTG
GATCGCTACC GTCGCACCGC ATCGCCCATC GCCGACCTGC CCTTCGCGGT CGCGCCGCTG
TGGTGGCGTA GCCCGCCGGC GATCGCACTG TATGTACTGA TTGGCGGCGG CCTGTTGATC
GGCCTGTGGC GCTGGCGGCA CCGCCATCTG GTGGCGCGCG AACGCATGCT GGCCGAATTG
GTGTCCGAGC GCACTTACCA GCTGGAGCGC GAAAAACGCG AACTGGAAAA CGCGCGCGCG
GCATTGGCCT TGAAGGCCAG CCACGACGCG CTGACCGGCC TGCTCAATCG CTCCGGCATC
CTGGAAGCGA TGGCCGCAGA ACTGCAGGGC TGCGCGCACG GCGAGCATCC GCTGGCAGTG
GTGTTGATCG ATCTGGACCA CTTCAAACAG GTCAACGACG ACCATGGGCA CCTGGTCGGC
GATGCGGTGC TGGCCACGGT GGGCGCGCGG CTGACGGCCT GCCTGCGCGA TTCGGACAAG
GTGGGCCGCT ACGGCGGCGA AGAATTGCTG CTGTTGCTGC CGGGCGTGAT CCAACAGAGC
CAGCGCCGGC TGCGCGCCAT CCACGAAGCG CTCAGCCTGG CCCCCTACGA AGTGGGTGCC
GCACGCCCGC TGCAGGTGAC CTGTTCGGTG GGCGTGTCCT GGTTCCGCGT CGGCGACACC
GCCGCGTCGT TGCTGGCGCG TGCCGACGAG GCGCTGTATC GCGCCAAGCG CTCGGGCCGT
AATCGCATCG AACCAGCGGA ACCGGAGAGT TCGGTGGCAT AG
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| Protein sequence | MGFQQRQWRS SHRRAPFAVV LLLALLSLAD LAGAQSISIR RYAHDQGLLG LAGTCLLQTR
ATLLWVCTES GLYRYNGRTF QQVPLDGLRN EPISSMTESA DGRLWVAGFQ SVFVGDEHGF
RKLAPDEAQH LQDKIQLAGL PWGTVLLNEG SLEILQPRAN GHWQSQPLLD TATRVRVPEL
SKVFSLSVDG NTLWAGCARK LCAIDAQHKV QVFGPERGVP EDRWSSVLRD QDGGLWVRGA
GTLLYRARGA DTFSVRPLPL LDGSTVGRQA PLVMDREGRV LVRRNDGLAR WENGRWRTFG
TENGLPPASS DAILVDREGD VWMTVDGEGL VRWAGYEWIE NWDASQGMPA APTWSIARDG
QGALLVGNEH GIGRQTDPDG RFVPALHSAG IQIVGMERSQ DGSLWTLSSA GFLRRTWPDG
HSAEIAKLPR TGRRLLIDRQ GRLWMLSAGG LFVIEHPLDG GSMQAVADMP AIAYTDVQQT
ADGTLWVSTS NGLFRLQDGH WSNVKVQVNG GAPEPWISKF HISDSGEVWL AFYRPGLWHG
MLLRDGLDLQ EISDEALRDV GVYLLCGDSA GRVWVGHTRG VEVYDGEHWA HLSQSQGLIW
EDISEAAFAE DPDGSIWIGT ARGVSHLSDP AHLFDERQPS VRIDSLSRGG MPVQRGQLLG
WSDKPLHIEL STMEVYDDPS RLTVRYRLLG LHDEWIQSDN LSIDQPPLPS GHFRLQVQVL
DRYRRTASPI ADLPFAVAPL WWRSPPAIAL YVLIGGGLLI GLWRWRHRHL VARERMLAEL
VSERTYQLER EKRELENARA ALALKASHDA LTGLLNRSGI LEAMAAELQG CAHGEHPLAV
VLIDLDHFKQ VNDDHGHLVG DAVLATVGAR LTACLRDSDK VGRYGGEELL LLLPGVIQQS
QRRLRAIHEA LSLAPYEVGA ARPLQVTCSV GVSWFRVGDT AASLLARADE ALYRAKRSGR
NRIEPAEPES SVA
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