Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_00871 |
Symbol | |
ID | 6305967 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 2499325 |
End bp | 2500965 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 642639731 |
Product | ribosomal large subunit pseudouridine synthase B |
Protein accession | YP_001913591 |
Protein GI | 188576662 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.538678 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGACA CCCCCCGCAA GCTGTCGTTG AACAAGCTTT CCCTCAAGCG CGACAGCGCG CCCGAAGCGC CCAAGCTGGA AGAGCGCCTG CACAAGGTGC TGGCCCAGGC CGGCCTCGGT TCGCGCCGCG CGCTGGAACA ACGCATCGCC GATGGCCTGA TCAAGGTCAA TGGCACCGTC GCGCAGACCG GCATGTCGGT GCGCAGCGGC GACAAGATCG AACTGGACGG CCGCAGCTTC GTCGCCAGCG CGCTGACCGA GCCCTCGCGC GTGCTGATCT ACAACAAGCC CGAAGGCGAA GTGACCACGC GCGAAGATCC AGAAGGCCGT CCGACCGTGT TCGAGTCGCT GCCCGCGCTG AAGGGCTCGC GCTGGATCGC CATCGGCCGC CTGGACATCA ATACCACCGG CCTGTTGCTG TTGACCACCG ACGGTGAGCT GGCCAACGCG ATGATGCACC CCTCCTACGA GGTCGAACGC GAATACGTGG TGCGCGTGCG TGCCCCGGAA GGCGAAGAGA AGGTCTCCGA TGCGATCATC GAGCGCCTGT CGCGTGGTGT GCTGCTGGAA GACGGCGGCG CCAAGTTCGA CGAGATCGAA CGCATCGGCG GCACCGATTC GCACGACTGG TTCCGCGTGG TGGTCAAGGA AGGCCGCAAC CGCGAAGTGC GCCGCCTGTG GGAATCGCAA GGTTGCCAGG TTAGCCGCCT CAAGCGCAGC CGCTACGGCA AGATTTCGCT GCCGCGCGAA CTGCTGCGTG GGCAGTCGGT GGAAGTGGCG CAGGACAAGG TCGATGCCCT GCGCGCCGAA CTCAAGCTGG AGGAAGGCGC GCCGTCTGCA CTGACACTGC AGCCGGTGAT CGGCCAGCGC CGCGCCGCCA AGTCCACCGT GCACGTCTCG CGCGACGGCC GCAGCAATGC CTATGTCAAC GGCCACACCT CCGGCGCCGA TGAAGGCCGC GAGCTGCGTC GTTTCGACAA CCTGCGCGAA GATCGCGGCC GCGGCGGTCG CGGCAAGCCG GGTGACTTCA AGGGTGGCCT GACGGTCAGC GGCGAAGCCG CAGCCCGGCA GTCGCAGCAG CGCCCGTTCA AGCAGCGCGG CCCGGCCAAA GGCGACCGTG GCGCGTTGCC CGAAGGCAAC CCGGCCGCGT TCCGCAGCTG GTATGTGCCC GATGGCGTGA GCACCGGCCC GAGCGGTCAC CGCAATGCCG GCCCAAGCGG CCCGGGCACC GGTCAGGCGC GCCCGTATGC GAAGAAAGGC CCGGGCGGCG CGCGTCCGGG TGCTGGCGGT CCAGGTGGCG CCCGCTCGGG TGGTCCGGGG CGCGGCGGTG CTGGTGGCGG GCAAGGTCAG TCGCAGGGTC AAGGCCAGGG GCAGCGCAAG CACCCGTATG GTCACCCGGG CAACGCACCG AGCTTCCCCT CCGACCACGC CAACCCGGGT TTCAGCCCGT ACGGTGCGGC CCGTCCTGCT GGCGGTCCGA GTGGTGGCCG TCCGGGTCCG GGCGGTCATC GCGGTCCGGC GTCTGCCAAT CGTGGCCCGG GCGGTCCCGG TGGCCCAGGT GGCGCACCGC GCGGCCCGGG CGGTCGTCCG CCGGGTGGCG GCAATCGTCG TCCCCCCGGT GGCGGTAATC GCGGTCGCTG A
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Protein sequence | MSDTPRKLSL NKLSLKRDSA PEAPKLEERL HKVLAQAGLG SRRALEQRIA DGLIKVNGTV AQTGMSVRSG DKIELDGRSF VASALTEPSR VLIYNKPEGE VTTREDPEGR PTVFESLPAL KGSRWIAIGR LDINTTGLLL LTTDGELANA MMHPSYEVER EYVVRVRAPE GEEKVSDAII ERLSRGVLLE DGGAKFDEIE RIGGTDSHDW FRVVVKEGRN REVRRLWESQ GCQVSRLKRS RYGKISLPRE LLRGQSVEVA QDKVDALRAE LKLEEGAPSA LTLQPVIGQR RAAKSTVHVS RDGRSNAYVN GHTSGADEGR ELRRFDNLRE DRGRGGRGKP GDFKGGLTVS GEAAARQSQQ RPFKQRGPAK GDRGALPEGN PAAFRSWYVP DGVSTGPSGH RNAGPSGPGT GQARPYAKKG PGGARPGAGG PGGARSGGPG RGGAGGGQGQ SQGQGQGQRK HPYGHPGNAP SFPSDHANPG FSPYGAARPA GGPSGGRPGP GGHRGPASAN RGPGGPGGPG GAPRGPGGRP PGGGNRRPPG GGNRGR
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