Gene PXO_00871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_00871 
Symbol 
ID6305967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand
Start bp2499325 
End bp2500965 
Gene Length1641 bp 
Protein Length546 aa 
Translation table11 
GC content70% 
IMG OID642639731 
Productribosomal large subunit pseudouridine synthase B 
Protein accessionYP_001913591 
Protein GI188576662 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.538678 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGACA CCCCCCGCAA GCTGTCGTTG AACAAGCTTT CCCTCAAGCG CGACAGCGCG 
CCCGAAGCGC CCAAGCTGGA AGAGCGCCTG CACAAGGTGC TGGCCCAGGC CGGCCTCGGT
TCGCGCCGCG CGCTGGAACA ACGCATCGCC GATGGCCTGA TCAAGGTCAA TGGCACCGTC
GCGCAGACCG GCATGTCGGT GCGCAGCGGC GACAAGATCG AACTGGACGG CCGCAGCTTC
GTCGCCAGCG CGCTGACCGA GCCCTCGCGC GTGCTGATCT ACAACAAGCC CGAAGGCGAA
GTGACCACGC GCGAAGATCC AGAAGGCCGT CCGACCGTGT TCGAGTCGCT GCCCGCGCTG
AAGGGCTCGC GCTGGATCGC CATCGGCCGC CTGGACATCA ATACCACCGG CCTGTTGCTG
TTGACCACCG ACGGTGAGCT GGCCAACGCG ATGATGCACC CCTCCTACGA GGTCGAACGC
GAATACGTGG TGCGCGTGCG TGCCCCGGAA GGCGAAGAGA AGGTCTCCGA TGCGATCATC
GAGCGCCTGT CGCGTGGTGT GCTGCTGGAA GACGGCGGCG CCAAGTTCGA CGAGATCGAA
CGCATCGGCG GCACCGATTC GCACGACTGG TTCCGCGTGG TGGTCAAGGA AGGCCGCAAC
CGCGAAGTGC GCCGCCTGTG GGAATCGCAA GGTTGCCAGG TTAGCCGCCT CAAGCGCAGC
CGCTACGGCA AGATTTCGCT GCCGCGCGAA CTGCTGCGTG GGCAGTCGGT GGAAGTGGCG
CAGGACAAGG TCGATGCCCT GCGCGCCGAA CTCAAGCTGG AGGAAGGCGC GCCGTCTGCA
CTGACACTGC AGCCGGTGAT CGGCCAGCGC CGCGCCGCCA AGTCCACCGT GCACGTCTCG
CGCGACGGCC GCAGCAATGC CTATGTCAAC GGCCACACCT CCGGCGCCGA TGAAGGCCGC
GAGCTGCGTC GTTTCGACAA CCTGCGCGAA GATCGCGGCC GCGGCGGTCG CGGCAAGCCG
GGTGACTTCA AGGGTGGCCT GACGGTCAGC GGCGAAGCCG CAGCCCGGCA GTCGCAGCAG
CGCCCGTTCA AGCAGCGCGG CCCGGCCAAA GGCGACCGTG GCGCGTTGCC CGAAGGCAAC
CCGGCCGCGT TCCGCAGCTG GTATGTGCCC GATGGCGTGA GCACCGGCCC GAGCGGTCAC
CGCAATGCCG GCCCAAGCGG CCCGGGCACC GGTCAGGCGC GCCCGTATGC GAAGAAAGGC
CCGGGCGGCG CGCGTCCGGG TGCTGGCGGT CCAGGTGGCG CCCGCTCGGG TGGTCCGGGG
CGCGGCGGTG CTGGTGGCGG GCAAGGTCAG TCGCAGGGTC AAGGCCAGGG GCAGCGCAAG
CACCCGTATG GTCACCCGGG CAACGCACCG AGCTTCCCCT CCGACCACGC CAACCCGGGT
TTCAGCCCGT ACGGTGCGGC CCGTCCTGCT GGCGGTCCGA GTGGTGGCCG TCCGGGTCCG
GGCGGTCATC GCGGTCCGGC GTCTGCCAAT CGTGGCCCGG GCGGTCCCGG TGGCCCAGGT
GGCGCACCGC GCGGCCCGGG CGGTCGTCCG CCGGGTGGCG GCAATCGTCG TCCCCCCGGT
GGCGGTAATC GCGGTCGCTG A
 
Protein sequence
MSDTPRKLSL NKLSLKRDSA PEAPKLEERL HKVLAQAGLG SRRALEQRIA DGLIKVNGTV 
AQTGMSVRSG DKIELDGRSF VASALTEPSR VLIYNKPEGE VTTREDPEGR PTVFESLPAL
KGSRWIAIGR LDINTTGLLL LTTDGELANA MMHPSYEVER EYVVRVRAPE GEEKVSDAII
ERLSRGVLLE DGGAKFDEIE RIGGTDSHDW FRVVVKEGRN REVRRLWESQ GCQVSRLKRS
RYGKISLPRE LLRGQSVEVA QDKVDALRAE LKLEEGAPSA LTLQPVIGQR RAAKSTVHVS
RDGRSNAYVN GHTSGADEGR ELRRFDNLRE DRGRGGRGKP GDFKGGLTVS GEAAARQSQQ
RPFKQRGPAK GDRGALPEGN PAAFRSWYVP DGVSTGPSGH RNAGPSGPGT GQARPYAKKG
PGGARPGAGG PGGARSGGPG RGGAGGGQGQ SQGQGQGQRK HPYGHPGNAP SFPSDHANPG
FSPYGAARPA GGPSGGRPGP GGHRGPASAN RGPGGPGGPG GAPRGPGGRP PGGGNRRPPG
GGNRGR