Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_00860 |
Symbol | ccmF |
ID | 6305978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 2508999 |
End bp | 2510936 |
Gene Length | 1938 bp |
Protein Length | 645 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642639742 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_001913602 |
Protein GI | 188576673 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0670672 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTCCTG AGCTCGGGAC GTTCCTACTG GTACTGGCCC TGCTGGTGGC ACTGGTGCAA GCCGTGGTGC CGCTGGCCGG CGCGCAGCGT GGGCGCAGCA GCTGGATGGC CGTGGCGCGA CCGGCGGCCA TGGTGCAGCT GGCGTTGATC GCGTCGGCCT TTGCCGTGTT GACGCACGCC TTCCTGGTGC AGGATTTTTC GGTGCGTTAC GTGGCCGAAA ATTCCAACAG CCTGCTGCCG ATGATGTATC GCTATTCGGC GGTGTGGGGC GCGCACGAAG GCTCGCTGCT GCTGTGGACG CTGGTGCTGG CGTTGTGGAC GGGCGCGGTA GCGATCTGGT CGCGGCAGCT ACCCGCGCAT GTGATCGCCC GCGTGCTCGG CGTCATGGCG CTGGTGAGCA TTGGATTTCT GGCGTTTTTG CTGTTCACCT CCAACCCGTT TGCGCGGCTG TTTCCGGTGC CGCTGGAAGG TGGCGACCTC AATCCGCTAC TGCAGGATCC GGGGCTAATC GTCCATCCGC CGATGCTGTA TTGCGGCTAC GTCGGCTTTG CGGTGCCGTT CGCGTTCGCC ATCGCCGCAC TGCTGGAAGG CCGCATGGAT GCGCGCTGGC TACGCTGGAC GCGGCCGTGG ACCAACGTCG CCTGGTCGAT GCTCACGGTT GGCATCGCGC TGGGTAGCTG GTGGGCGTAT TACGAGCTGG GCTGGGGTGG CTGGTGGTTC TGGGACCCGG TGGAGAACGC CAGTTTCATG CCGTGGCTGG TGGGCACCGC GCTGCTGCAT TCGCAGGCGG TGACCGAAAA GCGCGGCAGC TTCGCAAGCT GGACCTTGTT ACTGGCAATC GCCGCCTTCG CGCTCTCGCT GCTGGGCACC TTCCTGGTGC GCTCGGGCGT GCTGACCAGC GTGCATTCGT TCGCCGCAGA CCCATCGCGC GGACTGTTCA TTCTGGTGTT CTTGTTACTC GTGGTCGGTG GTTCGCTGGT GCTGTATGCG CTGCGCGCGC CGCGGTTGTC GCTGGTGGAT GATCCGCGCC GCGCGTTTGC CGGCAGCTCG CGCGAAACCC TGTTGCTGTT GAACAACCTG TTGCTCACCT GCGCCTGCGC AATGGTGTTG CTGGGTACCT TGTATCCGCT GCTGGCCGAT GCATTGGGGC TGGGCAAGTT GTCGGTCGGC CCGCCCTATT TCGGCACCTT GTTCGTGGTG TTGATGGCGC CGCTGGTGGC GCTGGTGCCG TTCGGCCCGC TCACCCGCTG GCAACGCGAA CAGGCCTCGC GGCCGTTGGC GATGCTCGCA CCGTGGGCAG GCCTGGCGTT GGCGGCCGGT GTGCTGGCCT GGTTCGCCGC GCCGCAGGGG CAGTTGAAAG CCGCCGTCGG TGTTGCCGGC GCGGCCTGGG TGCTGCTGGG CACAGCGCGG TTCTTGTGGA CGCGGCGCGC GGCCAAGGGG CGCAAATTCA CTCCTGAAAT GCTGGGCATG GTGCTGGCGC ATCTGGGCGT TGCGGTGTTC CTGTCCGGCG CCTTGCTGGT GGAAGGGTTG AGCCTGCAGC GCGAGGTGGC GTTGGCGCCC GGGCAACAGG TGCAGATCGG CCGTTATGCG CTGCATTTCG ATGGGCTGGA AGAACTGCGC GGTCCCAATT ACGTGTCCGA CCGTGCCAAC CTGCAGGTGC TCAAGGACGA TGCGCCGGTG GGCGTGGTGC ATGCAGAAAA ACGCCGCTAT GCCAGCGGCG GGCAGACCTT GACCGAGGCG GCCATCCGCC CCGGTCCGTT TGGCGACCTG TATGTCGCCC TTGGCGAACC GCTGGGCAAT CAGGCCTGGG CGGTGCGCGT CCACCTCAAA CCGTTCGTCC GCTGGATCTG GCTGGGGGCG CTGCTGATGG CGCTCGGCGG CCTGGTGACC GCGGCCGACC GGCGTTTTCG TCGTTCTCCG GAGATCCAAG ATGGTTGA
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Protein sequence | MLPELGTFLL VLALLVALVQ AVVPLAGAQR GRSSWMAVAR PAAMVQLALI ASAFAVLTHA FLVQDFSVRY VAENSNSLLP MMYRYSAVWG AHEGSLLLWT LVLALWTGAV AIWSRQLPAH VIARVLGVMA LVSIGFLAFL LFTSNPFARL FPVPLEGGDL NPLLQDPGLI VHPPMLYCGY VGFAVPFAFA IAALLEGRMD ARWLRWTRPW TNVAWSMLTV GIALGSWWAY YELGWGGWWF WDPVENASFM PWLVGTALLH SQAVTEKRGS FASWTLLLAI AAFALSLLGT FLVRSGVLTS VHSFAADPSR GLFILVFLLL VVGGSLVLYA LRAPRLSLVD DPRRAFAGSS RETLLLLNNL LLTCACAMVL LGTLYPLLAD ALGLGKLSVG PPYFGTLFVV LMAPLVALVP FGPLTRWQRE QASRPLAMLA PWAGLALAAG VLAWFAAPQG QLKAAVGVAG AAWVLLGTAR FLWTRRAAKG RKFTPEMLGM VLAHLGVAVF LSGALLVEGL SLQREVALAP GQQVQIGRYA LHFDGLEELR GPNYVSDRAN LQVLKDDAPV GVVHAEKRRY ASGGQTLTEA AIRPGPFGDL YVALGEPLGN QAWAVRVHLK PFVRWIWLGA LLMALGGLVT AADRRFRRSP EIQDG
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