| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00795 |
|---|
| Symbol | |
|---|
| ID | 6305903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 2431867 |
|---|
| End bp | 2434227 |
|---|
| Gene Length | 2361 bp |
|---|
| Protein Length | 786 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642639668 |
|---|
| Product | S1 RNA binding domain protein |
|---|
| Protein accession | YP_001913528 |
|---|
| Protein GI | 188576599 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0660252 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACTATA GCCAGCTTGC CCATCAGATT GCTCGCACCA TCGCCGACGA GATCGGTGCT
CAGCCCGCCC AGGCGCGCGC CGCCATTGCC CTGCTGGATG AGGGCGCCAG CGTCCCGTTC
ATTGCGCGCT ACCGCAAGGA AGTCACCGGC GGGCTGGACG ATACCCAGTT GCGCAATCTG
GAAACGCGCC TGACCTACCT GCGCGAGCTG GAAGAACGCC GCGCGGTGAT CCTGTCCAGC
ATCGGCGAGC AGGGCAAGCT CAGCGACGAA CTTCGCGACG AAATTGTGGC TGCCGATACC
AAGTCGCGGC TGGAAGATCT GTATCTGCCC TACAAGCCCA AGCGCCGCAC CCGCGCGCAG
ATCGCGCGAG AAGCCGGATT GGAGCCATTG GCCGATGGCC TGTTGTCGGA CCCGACGCAG
ACGCCGGAAG TCGCCGCGGC CGCCTTCATC GATGCCGAAA AGGGCGTTGC CGACAGCAAG
GCCGCGCTGG AAGGCGCGCG CGCAATCCTG ATGGAGCGCT GGGGCGAAGA CGCCGCACTG
CTCGGTGAGC TGCGCAGCTG GCTGAGCGAC AATGGCGTGA TCCGCGCGCG CGTGGCCGAG
GGCAAGGAAG AGGTCGGTGC CAAGTACCGC GACTACTTCG ATCACGCCGA ATCGCTGGCG
AAGATTCCGT CGCACCGCTT GCTGGCGCTG TTTCGCGCGC GACGTGAGGA GTTTCTCTAT
CTGGATCTCG ATCCGGGCAG CGATGCCGAG GCTGGGCATC AGTACGCCGA AGGCCGGGTG
GCGCGCAGTG CCGGTATTTC CAATGAAGGC CGCCCGGCCG ATCGCTGGTT GCTGGATGCC
TGCAGGCTGA CCTGGCGCGC CAAGCTGCAC ATGCATCTGC TGCTGGACCT GTTCAACCAG
GCGCGCGAAA AGGCCGAGGC CGAGGCGATC GCGGTGTTCG GCGACAACCT CAAAGATCTG
ATGCTGGCGG CGCCGGCCGG CCCGCGCGTG GTTCTGGGGC TGGACCCGGG CATCCGTACC
GGTTGCAAGA TCGCCGTAGT CGATGCCACA GGCAAGCTCG TGGCCACCGA AACGATTTAT
CCGCACGAGC CCAAGCGGCA GTGGGATCAG TCGCTGCAGA CCATCAAAAA GTTGTGCATG
CAGCACAACG TGGAGCTGAT CGCGATCGGC AACGGGACTG CCAGTCGCGA GACCGACAAG
CTCGCCGGCG AAGCGATTGC GCTGTGCGGC GCTGTCAAGT TGCAGAAGGT TGTGGTCAGC
GAGGCTGGCG CGTCGGTGTA TTCGGCGTCG GAGTTCGCGG CCAAGGAGTT CCCCAATCTG
GACGTGTCGC TGCGTGGTGC GGTGTCGATC GCGCGTCGTC TGCAGGATCC ATTGGCCGAG
CTGGTGAAGA TCGAGCCCAA GGCAATCGGC GTGGGCCAAT ACCAGCACGA TGTCGATCAG
TATCGTCTGG CCAAGGCGCT GGAAGCGCGT GTGGAAGACT GCGTCAACGC GGTCGGTGTG
TACGTCAATA CCGCCTCGGC GGCGCTGCTG TCGCGCGTGT CCGGGCTGTC GAGCACGGTG
GCGGAAAATA TCGTGCGTCA CCGCGACGAC AACGGCCCGT TCAAGCGTCG CAAGGACTTG
CTCAAGGTGC CGCGATTGGG CGACAAGACC TTCGAACAAT GCGCCGGCTT CCTGCGCATT
GCCGATGGCG ACGAGCCGCT GGACGTGTCG GCGGTGCATC CGGAAGCCTA TCCGGTGGTC
GAGCGCATCG TCGGCAGCAC CGGCAAGCCG ATCAAGGCAC TGCTGGGCGA CGGCAGTTTT
CTGCGCGGCC TGAAGCCGGA GATGTTCACC AACGAGCAAT TCGGTGTGCC AACCGTGCGC
GACATTCTCA AAGAGCTGGA AAAACCCGGC CGCGATCCGC GTCCGGAGTT CAAGGCAGCG
CAGTTCGCCG AAGGCATTGA GGACATCAAG CACCTCAAGC CCGGCATGGT GCTCGAAGGG
GTGGTCAGCA ACGTGGCCGC GTTCGGCGCG TTCGTCGATA TCGGCGTGCA CCAGGATGGT
TTGGTGCACA TCTCGGCGTT GTCGGAGACC TTCGTCAAGG ATCCGCGCGA CGTGGTCAAG
GCCGGCGACA TCATCAAGGT CAAGGTGCTG GAAGTGGATG TGGCGCGCAA GCGCATCGCG
CTGAGCTGCC GTTTGTCCGA TACGCCGGCA CCGACCGATG GCTCAGCGCA ACCGCGCGAG
GCTCGAGGCA ACGGTCCGGG GCAGGGCAGG CGCGACGGTG GTGGGCGCGT TCAGGCGCAA
GCCAACAGCA AACCGCGGAT CACCGTGCCG CCGGCCGATA ATGCGCTGGC AGAGGCGTTT
GCACGTGCTA AGCGTAGCTA A
|
|---|
| Protein sequence | MHYSQLAHQI ARTIADEIGA QPAQARAAIA LLDEGASVPF IARYRKEVTG GLDDTQLRNL
ETRLTYLREL EERRAVILSS IGEQGKLSDE LRDEIVAADT KSRLEDLYLP YKPKRRTRAQ
IAREAGLEPL ADGLLSDPTQ TPEVAAAAFI DAEKGVADSK AALEGARAIL MERWGEDAAL
LGELRSWLSD NGVIRARVAE GKEEVGAKYR DYFDHAESLA KIPSHRLLAL FRARREEFLY
LDLDPGSDAE AGHQYAEGRV ARSAGISNEG RPADRWLLDA CRLTWRAKLH MHLLLDLFNQ
AREKAEAEAI AVFGDNLKDL MLAAPAGPRV VLGLDPGIRT GCKIAVVDAT GKLVATETIY
PHEPKRQWDQ SLQTIKKLCM QHNVELIAIG NGTASRETDK LAGEAIALCG AVKLQKVVVS
EAGASVYSAS EFAAKEFPNL DVSLRGAVSI ARRLQDPLAE LVKIEPKAIG VGQYQHDVDQ
YRLAKALEAR VEDCVNAVGV YVNTASAALL SRVSGLSSTV AENIVRHRDD NGPFKRRKDL
LKVPRLGDKT FEQCAGFLRI ADGDEPLDVS AVHPEAYPVV ERIVGSTGKP IKALLGDGSF
LRGLKPEMFT NEQFGVPTVR DILKELEKPG RDPRPEFKAA QFAEGIEDIK HLKPGMVLEG
VVSNVAAFGA FVDIGVHQDG LVHISALSET FVKDPRDVVK AGDIIKVKVL EVDVARKRIA
LSCRLSDTPA PTDGSAQPRE ARGNGPGQGR RDGGGRVQAQ ANSKPRITVP PADNALAEAF
ARAKRS
|
|---|
| |