| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00678 |
|---|
| Symbol | |
|---|
| ID | 6305711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 2249464 |
|---|
| End bp | 2251251 |
|---|
| Gene Length | 1788 bp |
|---|
| Protein Length | 595 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642639479 |
|---|
| Product | Putative signal protein with GAF, GGDEF and EAL domains |
|---|
| Protein accession | YP_001913345 |
|---|
| Protein GI | 188576416 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain
[COG2203] FOG: GAF domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0927231 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCGCG GCCTTTGCCT GCTGGATTCG CCGCCAGACC CGGTGTTCGA CACCGTGGCC
GCCATGGCAG CGCGCAGCAT GGGGACGGAA ATTGCGCTGG TATCGCTGGT GGACGAACAC
CGCCAGTGGT TCAAGACACG CATTGGCCTG GAAGAGCGGG AGACGCCACG CAGCCAGGCG
TTCTGCACGC ACGCGATCCG CTCGGACGAA GTGATGGTGG TACTGGATGC GCGGCTGGAT
CCGCGCTTGT GCGACAACCC GCTGGTGCTG GGGCCGCCAT TCATTCGCTT CTATGTCGGC
GCACCGCTGA AGCTACGCGA TGGCCACAGT ATCGGCACCT TGTGCGCCAT CGGCACCAGC
CCGCGCGAAG GACTGGATGC AGGGGCGATT ACCCAGCTGG AAGGCCTGCG CGACCTGGCC
GTGTTGCGCG TGGAAAACCT GCGCAGCAAC ACCTACCGCG ACGGTCCGAC CGGGCTACCC
AACCGCTCGC GTTTCAGCGA AGACCTGGAT ACCTGGCTGT CGCAGCGCGA TACCGCACCA
GCCACCACGG CGGTGGCGAT CGATGTGTGC GGCAGCGATT ACTTGCGCGA CATGGTCAAG
GCGCTGGGCT GGGAATACGC AGATGGCTAT GTCTCCACGG CACAGCGCCG GCTGACTGCC
TATCTGCCCG GCGGCACCAT CCTGTATCGG TTGGACCCCA CCACCTTCGG CTTCCTGGCG
CAGGCCGAAG GCCAGCGCCT GGCCACGCTG TGCACGAAGG TCTCCAAGGC GTTCACCGAG
CCATTGGAAC ATCAAGGCAT CCCGCATACC GCAGTGGCTT CGATCGGCGC GGTCTCGCTG
CAGTCCAGCT ACGGCGCCGC TGACACCATC CGCTCGCTGA CCACCTCGGT GGATATCGCG
CGCGAGCGCT GCATGCCGTG GAGCATGTAT GAGCGCAAGC ACGATGTTGC CCAGCGCAAT
ACCTTCCGCC TGCTCGCTGC CCTGCCCGCC GCGCTGGACA GCAACAACCA GCTGCGTCTG
CACTATCAAC CGCGCGTGGA TCTGCACGAC CACCGCTGCG TGGGCGTGGA GGCATTGCTG
CGCTGGCAGC ACCCGCTGAT CGGCCCGGTG GTGCCGTCGG ATTTCATTCC GATGGCCGAG
AAAACCGCGC TGATCAACCG CATCACCGCC TGGGTCATCG ACAACGGCAT CGCGCAGGCC
GCGCGCTGGC AGCAGCAAGG CCTGGACTTC AATCTGGCCT TGAACGTGTC GGCTGCCGAT
CTGGATCGCC CCGGCTTTGC CGACCTGCTG CAGCGTGGCC TGGATCGCTA CAAGCTGGAC
CCACGCCGGC TGGAAATCGA ATTCACCGAA AGCGCAATGA TCCGCCACCC CGAACACCTG
GCCGAACAAC TGGCCGCCAT CGCAGCGCTG GGCGTACATA TCGCCATCGA CGACTTCGGC
ACTGGCTACA GCAATTTCAG CTATCTCAAG CAACTGCCGG CCAGCGCGTT GAAGATCGAT
CAATCCTTCA TCCGCTCGTT GCCGGACAAC CGCACCGACC GCACCCTGGT ACCGGCGATG
ATCCAGCTTA GCCATAGCCT GGGCCAGCGC GTGGTCGCCG AAGGCATCGA ATCGGCGGAG
GCGTATGCGC ACTTGCGCGC CTGGGGCTGC AACGAAGGCC AGGGGTATTG GATCGCCAAA
CCGATGCCGG CCGCCGCACT GGAAACCTGG TTGGAAACGC CGTGGCACGA GCAACATGCC
GCACCGGTCA ATCAGCTTGC CGCCAGCCTG GCGGCGGCAC GCGTCTAA
|
|---|
| Protein sequence | MLRGLCLLDS PPDPVFDTVA AMAARSMGTE IALVSLVDEH RQWFKTRIGL EERETPRSQA
FCTHAIRSDE VMVVLDARLD PRLCDNPLVL GPPFIRFYVG APLKLRDGHS IGTLCAIGTS
PREGLDAGAI TQLEGLRDLA VLRVENLRSN TYRDGPTGLP NRSRFSEDLD TWLSQRDTAP
ATTAVAIDVC GSDYLRDMVK ALGWEYADGY VSTAQRRLTA YLPGGTILYR LDPTTFGFLA
QAEGQRLATL CTKVSKAFTE PLEHQGIPHT AVASIGAVSL QSSYGAADTI RSLTTSVDIA
RERCMPWSMY ERKHDVAQRN TFRLLAALPA ALDSNNQLRL HYQPRVDLHD HRCVGVEALL
RWQHPLIGPV VPSDFIPMAE KTALINRITA WVIDNGIAQA ARWQQQGLDF NLALNVSAAD
LDRPGFADLL QRGLDRYKLD PRRLEIEFTE SAMIRHPEHL AEQLAAIAAL GVHIAIDDFG
TGYSNFSYLK QLPASALKID QSFIRSLPDN RTDRTLVPAM IQLSHSLGQR VVAEGIESAE
AYAHLRAWGC NEGQGYWIAK PMPAAALETW LETPWHEQHA APVNQLAASL AAARV
|
|---|
| |