| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00588 |
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| Symbol | msbA |
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| ID | 6305806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 2336631 |
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| End bp | 2338340 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642639572 |
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| Product | lipid A export permease/ATP-binding protein MsbA |
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| Protein accession | YP_001913436 |
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| Protein GI | 188576507 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.232531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGTTCG CCAAGCCGTA TCGTTTGCTG CTGGTCGCGG CGCTGATCGC GGCCTTGATC
GAAGCGGCCG GCACCACCGG TTTTCTGGCA TTGATGAAGC CGATCACCGA CGAAACCTTC
ATCTACAAGA ATGCCGAAGT CAGTCGCTGG CTGCCGGTGC AGATCATCTT GCTGTTCGTG
GTGCGTGGTA TTGCCGGCTA CATCACCGAT ATGGCGATGG GTAAATCCGC ACGCAGCATT
GCGCGCGATC TGCGCATCAA GGTCATGGCG AAATATCTGC GTCTGCCCGG ATCGCGCTTC
GATTCGGAGC CAGTGCCGTC GATGCTGATC CGTTTGGGTT CTGATTCGGA CCAGGTTGCG
CAAGCCGCGG TGGATGCGAT CAAGGTGATG ATCCAGCAAT CGCTGCAAGT CATCGGCGCG
CTGGCGCTGA TGTTGTGGCA TAGCTGGCAG GTGACGCTGA CCATTCTGGT GCTCGCCCCG
GTGCTGGCTT GGGTGATGGA CAAGGTGGCG CGGCGCTACC GGCGTATCAG CCACAGCATC
CAGGAAAGCG GCGCGCACTT GCTGCAGGCC GCAGACCAGA CCTTGTCCAG CCATCAGGAG
GTCAAGATCT ACGGCGCGCA GCAGACCGAG ATGGAGCGCT ATGGCGCGCT CGCCGATCGC
AATCTGCGCC TGGCGATGAA GGTCGAATCC ACGCGCGGCA TTTCCACCGC GACGGTGCAG
ATGATTGGTG CGATCGGCCT GTCGGCGTTG CTGTTCGTGG CTGGTGCGCA GGCATTGGCC
GGGCGCCTGA CGGCCGGTGA TTTCGTCGTG CTGATGACTT CGATGCTGAC GATCATTCCG
GGCCTCAAGC AGCTCACCAA TGTGCAGAAC ATGGTGCAGC GTGGCCTGGC ATCGGCCGAG
CGCTTGTTCT CGGTGCTCGA TAGCCCGGAC GAGCCGGATC AAGGCGCCGT AGCGCTGACG
CGTGCCAAGG GCTTGATCGA ATTCCGCGAT GTCACTGCGC GCTACCCAGG TCAGGTCAAT
CCGGCGTTGG CCGATGTCAG CTTCATCGCG CAGCCGGGCA CGGTGACCGC GATCGTCGGC
CGCTCGGGCA GCGGCAAATC CAGCCTGATC AAGTTGATTC CACGCTTCTA CGACGCCGAG
GCCGGGCAGA TTCTGCTCGA CGGACAACCG GTGCAGGCGT ATGCATTGGC GGATCTGCGC
CGGCAGATTG CGCTCGTCGG TCAGCAGGTC ATGCTGTTCG ACGGCAGCAT CGCCGAAAAC
GTGGCGTTCG GCGAAATGCG CAGCGCCGAC GCCAGCCAGC TGGAGCGTGC GATTCTGGGT
GCCAATGCGA TGGAATTTGT CGCGCAACTG CCCGAAGGCC TGCAGTCGCA TGTCGGTGCC
AAGGGGGGGC GTCTGTCCGG CGGCCAGCGC CAGCGTCTGG CGATCGCACG CGCCATGCTC
AAGGACGCGC CGATCCTGAT CCTGGACGAA GCGACTGCAG CGCTGGACAA CGAATCCGAG
CGCTTGGTGC AAGACGCCCT GCACAAGCTG ATGCCGGACC GCACCACGCT GGTGATCGCG
CATCGCCTGT CCACCATCGA ACATGCCGAT CAGGTGCTGG TGATGGACCA GGGCCGGATC
GTCGAGCGTG GCACGCATCA CGAATTGCTG GCGCAGGGCG GCTTGTATTC GCACCTGCAC
GGCATGCAGT TCCGCGAACG CCAGGCATGA
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| Protein sequence | MAFAKPYRLL LVAALIAALI EAAGTTGFLA LMKPITDETF IYKNAEVSRW LPVQIILLFV
VRGIAGYITD MAMGKSARSI ARDLRIKVMA KYLRLPGSRF DSEPVPSMLI RLGSDSDQVA
QAAVDAIKVM IQQSLQVIGA LALMLWHSWQ VTLTILVLAP VLAWVMDKVA RRYRRISHSI
QESGAHLLQA ADQTLSSHQE VKIYGAQQTE MERYGALADR NLRLAMKVES TRGISTATVQ
MIGAIGLSAL LFVAGAQALA GRLTAGDFVV LMTSMLTIIP GLKQLTNVQN MVQRGLASAE
RLFSVLDSPD EPDQGAVALT RAKGLIEFRD VTARYPGQVN PALADVSFIA QPGTVTAIVG
RSGSGKSSLI KLIPRFYDAE AGQILLDGQP VQAYALADLR RQIALVGQQV MLFDGSIAEN
VAFGEMRSAD ASQLERAILG ANAMEFVAQL PEGLQSHVGA KGGRLSGGQR QRLAIARAML
KDAPILILDE ATAALDNESE RLVQDALHKL MPDRTTLVIA HRLSTIEHAD QVLVMDQGRI
VERGTHHELL AQGGLYSHLH GMQFRERQA
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