Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_00538 |
Symbol | rnt |
ID | 6305593 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | - |
Start bp | 2127758 |
End bp | 2128393 |
Gene Length | 636 bp |
Protein Length | 211 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642639361 |
Product | ribonuclease T |
Protein accession | YP_001913228 |
Protein GI | 188576299 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
TIGRFAM ID | [TIGR01298] ribonuclease T |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0528077 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACGAAC CGGTCGATGC ACAGCCTGCC CCCTATTTTT TGCCGATGTC GCGCCGCTTT CGCGGCTATC TGCCCGTGGT GGTGGACGTC GAAACGGGCG GGTTCGATTC GAATAAGCAT GCGCTGCTGG AAATCGCCTG CGTGCCGATC GAAATGGATG CCGACGGTCG CTTCTTTCCC GGCGACACCG CCAGCGCGCA TCTGGTGCCT GCGCCCGGGC TGGAGATCGA CCCGAAATCG CTGGAAATCA CCGGCATCGT GCTCGACCAC CCGTTTCGCT TGGCGAAACA GGAAAAGGAC GCACTGGACC ATGTGTTCGC GCCGGTACGC GCGGCAGTGA AGAAATACGG CTGCCAGCGT GCGATCCTGG TTGGCCACAA CGCGCATTTC GATCTGAACT TTCTCAACGC GGCGGTGGCG CGCGTGGGCC ACAAACGCAA CCCGTTTCAT CCCTTCAGCG TGTTCGATAC GGTGACACTG GCCGGCGTGG CTTACGGCCA GACCGTGCTG GCACGAGCCG CCCAGGCCGC GGGCCTGGAC TGGAATGCCG CCGACGCGCA CAGCGCGGTC TACGACACTG AACAGACCGC ACGCCTGTTC TGCAAGATCG CCAACGCCTG GCCGGGGCCG GTTTAG
|
Protein sequence | MNEPVDAQPA PYFLPMSRRF RGYLPVVVDV ETGGFDSNKH ALLEIACVPI EMDADGRFFP GDTASAHLVP APGLEIDPKS LEITGIVLDH PFRLAKQEKD ALDHVFAPVR AAVKKYGCQR AILVGHNAHF DLNFLNAAVA RVGHKRNPFH PFSVFDTVTL AGVAYGQTVL ARAAQAAGLD WNAADAHSAV YDTEQTARLF CKIANAWPGP V
|
| |