Gene PXO_00522 details

Gene Information

• Locus tag: PXO_00522
• Symbol: secD
• ID: 6305583
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 2116228
• End bp: 2118072
• Gene Length: 1845 bp
• Protein Length: 614 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 642639351
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001913218
• Protein GI: 188576289
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTCGAAT TTCCTCGCTG GAAGTACTTC CTGATCCTGC TGGTGCTGGC GGTCAGTGCG 
CTGTATGCGC TGCCCAACAT CTATCAGAAG GACCCGTCCG TGCAGATCAC CGCCAGCCGC 
GGTGCTCAGC TCGACGACGC CTTGCGCAGT CGCATCGACG CCGACCTCAA GGCTGCCGGC 
ATCACGCCCA AGGCAGTCAC CAAGGAAGGC GACAGTCTGA TGGTGCGCCT GCCCTCGCTG 
CAGGCGCAGA CCCGCGCCAA CGACGTATTG CGTCAGCAGC TGGGCGAAAA CTACACCGTG 
GCGCTGAACC TGGCCTCCAC CGTACCGGAC TGGCTGGCCA AGCTGGGCGG CCGGCCGATG 
GTGCTGGGTC TGGACCTGGT GGGCGGCGTG CACTTCGCCA TGCAGGTCGA TCAGAAGGCC 
GCGCTGGAAA AGCGTCTGGA CGGTTTCGCC GAAGACATCC GCACCACCTT GCGCGATGCC 
CGCATCGCCT ATCACTCGGT GGAGCGTCGC GCGGATAACA GCATCCAGGT CAGCCTGGGC 
GAGGGTGCCG ACGCCGATGC CGCGCGCGTG ACGCTGGCCA AGGCGCAGCC GACCCTGACC 
TACGACGTCA GCGGCCAGAA CATCGCGGTC AAGGTGCCGG AGGCCGAGCT CAAGCAGATC 
GCCAGCGGTG CGATCGAGCA GAACCTCACC ACCTTGCGTA ACCGCGTCAA TGCACTGGGC 
GTGTCCGAGC CGACCATCCA GCGCCAGGGC GAAGACCGCA TCGTGGTCGA ACTGCCGGGC 
TTGCAGGACA CCGCCGAAGC CAAGCGCCTG ATCGGTGCCA CCGCGTCGCT GGAATTCCGC 
GCCGTGGTCG ACGGTAACGC CGAAGATGCA GTGCGCAGCG GCAACATCCC GCCGGAGGCC 
AAGGTCTATC GCGTGCGCGA TACCGGCGCG CCGGTGCTGC TCAACAAGCG CGCGTTGGTG 
ACCGGCGACC AGATGGTCAG CGCATCGGTC AGCAACGACC AGAACGGCAT GCCGGCGGTT 
GCGGTGACGC TCAACAACGT CGCCGGCCAG CGCATGTTCG ACTACACCAG CGCCAACGTC 
GGCAAGCTGA TGTCGGTGGT CTATATCGAG CGCATTCCCA CCGTGACCAT GGTCGATGGC 
AAGGAAGTGC GTAGCGTGCG GGTGAAGGAA GAAGCGTTGC CTGCTACACG CATCGCTGGT 
GTGTTTGGCA AGAACTTCCA GACCACCGGT TTGGAAAAGA CCGAAGCCGA AAATCTGGCC 
AAGCTGCTGA AATCCGGCTC GCTGGCCGCG CCGATGGATT TCGTCGAGGA ATACGTCATC 
GGCCCGAGCC TGGGTGCGGA GAACGTGGAG CGCGGCGTCA CCGCGGTGGT CTACTCGTTC 
CTGTTCACGC TGGTGTTCTT CACCATCTAC TACCGCGTGT TCGGTGCTAT CACCTCGGTG 
GCGCTGCTGT TCAACCTGTT GATCGTGGTG GCGGTGATGT CGCTGTTCGG TGCCACCATG 
ACGTTGCCGG GTTTTGCCGG CCTTGCCCTG TCGGTGGGTC TGTCGGTGGA CGCCAACGTG 
CTGATCAACG AGCGTATTCG TGAAGAGTTG CGCCTGGGCG TGCCGCCCAA ATCGGCGATT 
GCGGCCGGTT ATGAAAAGGC CGGCGGTACC ATTCTCGACG CCAACCTCAC CGGCCTGATC 
GTGGCGGTGG CCCTGTATGC GTTCGGCACC GGCCCGCTCA AGGGCTTCGC GCTGACCATG 
ATGATCGGTA TTTTCGCCTC GATGTTCACT GCGATCACGG TCTCGCGTGC GCTGGCGGTG 
TTGATCTACG GCAGCCGCAA GAAGCTGAAG TCTGTCGCTA TTTAA 

 

Protein sequence

MLEFPRWKYF LILLVLAVSA LYALPNIYQK DPSVQITASR GAQLDDALRS RIDADLKAAG 
ITPKAVTKEG DSLMVRLPSL QAQTRANDVL RQQLGENYTV ALNLASTVPD WLAKLGGRPM 
VLGLDLVGGV HFAMQVDQKA ALEKRLDGFA EDIRTTLRDA RIAYHSVERR ADNSIQVSLG 
EGADADAARV TLAKAQPTLT YDVSGQNIAV KVPEAELKQI ASGAIEQNLT TLRNRVNALG 
VSEPTIQRQG EDRIVVELPG LQDTAEAKRL IGATASLEFR AVVDGNAEDA VRSGNIPPEA 
KVYRVRDTGA PVLLNKRALV TGDQMVSASV SNDQNGMPAV AVTLNNVAGQ RMFDYTSANV 
GKLMSVVYIE RIPTVTMVDG KEVRSVRVKE EALPATRIAG VFGKNFQTTG LEKTEAENLA 
KLLKSGSLAA PMDFVEEYVI GPSLGAENVE RGVTAVVYSF LFTLVFFTIY YRVFGAITSV 
ALLFNLLIVV AVMSLFGATM TLPGFAGLAL SVGLSVDANV LINERIREEL RLGVPPKSAI 
AAGYEKAGGT ILDANLTGLI VAVALYAFGT GPLKGFALTM MIGIFASMFT AITVSRALAV 
LIYGSRKKLK SVAI