| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00489 |
|---|
| Symbol | |
|---|
| ID | 6305360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 1888124 |
|---|
| End bp | 1889866 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642639129 |
|---|
| Product | pts system fructose-specific eiibc component (eiibc-fru) (eii-fru) |
|---|
| Protein accession | YP_001913002 |
|---|
| Protein GI | 188576073 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1299] Phosphotransferase system, fructose-specific IIC component
[COG1445] Phosphotransferase system fructose-specific component IIB |
|---|
| TIGRFAM ID | [TIGR00829] PTS system, fructose-specific, IIB component
[TIGR01427] PTS system, fructose subfamily, IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCTT CCATCGTGGT CATCGCCGCT GGCGAACGCA GCACCGAAGC CGTCCTGGCG
GCTGAAGCGC TGCGCCGCGC GGCCACCGCC GCCGGGCGCA GCGTGACGAT CGAAATCCGC
AGCGACCAAG GCGTACTTGG CGCGCTACCG AGCGAGCTCG CCAGCGGTGC CACCCAGATC
TTGGTGGTCG GCGACGCCGA TGCCGACACC GCCCGCTTTG GCGATGCGCA ACTGGTGCGC
CTGAGCCTGG GTGCGGTGTT GGACGACCCG GCCGCCGCGC TGAACCAGCT CGCTGCACCC
GCTGCCGCAA CCGCATCGAC CGGTGCAGGC GGCGAAAGTG CAAGCAGCAA GCGCATCGTC
GCGATCACGT CTTGCCCCAC CGGCATCGCG CACACCTTCA TGGCTGCCGA AGGCCTGCAG
CAGGCCGCCA AGAAACTCGG CTACCAGATG CGGGTGGAAA CCCAGGGCTC GGTGGGTGCG
CAGGACGCAC TCACCGACGA TGAAATCCGC AATGCAGACG TCGTCATCAT TGCCGCCGAC
CGCGAAGTGG ACCTGGCCCG CTTCGGCGGC AAGCGCGTGT TCAAGAGCGG CACCAAACCG
GCGATCAACG ATGGCCCAGC GCTGATCAAC AAGGCCCTGG CCGACGCCAG CGTGCAGGGC
GGCGCGACGC CGGCCACCGG CACAGCCGCC AGCGCCACGG CGAGCAAGGG CAATAGCCGC
ACCGGTGCCT ACAAGCACCT GATGACCGGC GTCTCGTTCA TGCTGCCCTT CGTCACTGCC
GGCGGCCTGC TGATTGCGTT GGCATTTGCG CTGGGCGGCA TCTACGCCGG CGACGATGCG
CATCAAGGCA CGCTGGCCTG GTCGCTGTTC CAGATCGGCG CGAAGGCTGG CTTCACCCTG
ATGGTGCCTG CCCTGGCTGG CTACATCGCC TACTCCATCG CCGACCGTCC CGGCATCGCG
CCCGGCATGA TCGGCGGCTT GGTCGCGGCC AATCTCAACG CCGGCTTCCT CGGCGGGATC
ATCGCCGGCT TCATCGCCGG CTACGGCGTG GCCGCGCTCA ACCGCTACAT CACGCTGCCG
CGCAACCTGG AAGGACTCAA GCCGGTGCTG ATCCTGCCAG TGCTGGGCAC CCTGCTGGTC
GGGCTGGCGA TGATGTACGT GTTCGGCCAG CCCGTGGCCG ACCTGCTGGC CTGGCTCACC
GCCTGGCTGC GCGGCATGCA GGGCAGCAGC GCCTTGCTGC TGGGCTTGTT GCTCGGCGGC
ATGATGGCGT TCGATATGGG CGGGCCGGTC AACAAGGCGG CCTATGCGTT TTCCACCGGC
TTGATCGCCA GCCAGGTCTA CACCCCGATG GCCGCCGCCA TGGTGGCCGG CATGACCCCG
CCGCTGGGCA TCGCGCTGGC GACCTGGGTG TTCCGCAACC GCTTCACCGC CGAAGAACGC
GGTTCGGCCA CCGCGGCCGG CGTGCTTGGG CTGGCCTTCG TCACCGAAGG CGCCATCCCG
TATGCCGCAC GCGACCCGCT GCGTACCATC CCGGCGCTGG TGATCGGCTC GGCCGTGGCC
GGCGCGATCT CGATGACCGC CGGTGCCGAA TTGAAGGCGC CGCATGGCGG CATCTTCGTG
CTGCTGATCC CCAACGCCGT CACCCACTTG CTCAATTACG TGCTGGCCCT GGTGGTCGGC
GTGGTGGTCA CGGCGATCGC GCTGCGCCTG CTCAAGAAGC CGGTTGCCGA CGTCGTCGCC
TGA
|
|---|
| Protein sequence | MSSSIVVIAA GERSTEAVLA AEALRRAATA AGRSVTIEIR SDQGVLGALP SELASGATQI
LVVGDADADT ARFGDAQLVR LSLGAVLDDP AAALNQLAAP AAATASTGAG GESASSKRIV
AITSCPTGIA HTFMAAEGLQ QAAKKLGYQM RVETQGSVGA QDALTDDEIR NADVVIIAAD
REVDLARFGG KRVFKSGTKP AINDGPALIN KALADASVQG GATPATGTAA SATASKGNSR
TGAYKHLMTG VSFMLPFVTA GGLLIALAFA LGGIYAGDDA HQGTLAWSLF QIGAKAGFTL
MVPALAGYIA YSIADRPGIA PGMIGGLVAA NLNAGFLGGI IAGFIAGYGV AALNRYITLP
RNLEGLKPVL ILPVLGTLLV GLAMMYVFGQ PVADLLAWLT AWLRGMQGSS ALLLGLLLGG
MMAFDMGGPV NKAAYAFSTG LIASQVYTPM AAAMVAGMTP PLGIALATWV FRNRFTAEER
GSATAAGVLG LAFVTEGAIP YAARDPLRTI PALVIGSAVA GAISMTAGAE LKAPHGGIFV
LLIPNAVTHL LNYVLALVVG VVVTAIALRL LKKPVADVVA
|
|---|
| |