Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_00384 |
Symbol | |
ID | 6305475 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 2015945 |
End bp | 2018062 |
Gene Length | 2118 bp |
Protein Length | 705 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642639244 |
Product | Putative signal protein with GGDEF and EAL domains |
Protein accession | YP_001913116 |
Protein GI | 188576187 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.589781 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCAGC TGCGCTTTGG CTTGCAGGCA CGCTTTCTGT TGGTGATGGC GCTGACGCTG TTACTGGTCG GGACGATTCT GGCCTCGCTG TTGCAGCGAC AAAGCGCCAT GCAGCGCGAG GTGCGCGGGT TGAGTGCGCA GATCCTGCAT GAGCTATTCG ACCGTAGCCT GCGCACGCGC GGCGAAACGC TGGCGACCGA ACTGGCCTCC GGGCTGGCCA ATCCCGTGTA TTACTCGGAC CTGGGCGCGG TGGGCGCGCT GGTGCGCAAT GCCATGCGCC AGCAGGTGGT GAGCTATGTG CTGGTATTCG ACCGCCATGG CCGGCTGGTG CACGACGGCA CGCCGACCTT GCAGCGCTAC GGGCAGGCCA TGACCGATCC GCTCGCGGCC AAGGCGCTGG CGGCGCAGAA AATGGTGTTG CAGTACTCGC CGGAGGTGCT GGATGTCACG GTGCCGATCA AGATCGGCGA CCAGCGCATC GGCGGCGTGC GGGTGGGCAT GTCGCGCGAG CGGGTGCGCA AGATCGAGTC CGGCGCCAAT CTGACGTTGG TGCAAAACCT CAACGCCATC GGCAAGCGCG ATCTGGGCTG GCTGCTGGTG CTGCTGGCCG CGCTGGTGGG GCTGGGTGTC TTGCTGGCCA TTTATGTGCA GCGCACGCTG GTGGCGCCGG TGCGGCTGCT GGCGGCTGCG GCCAAGCAGA TCGAACGTGG TGATTACGCA GTACAGCTGC CGCCGCACCC GCGTAACGAC GAGATCGGCG AGCTGATTTC CGCGTTCGGG CGTATGAGCG AAAGCATCGC CCGCCACGAC CGCGAAGTGC GGCACATGGC CTACACCGAC GCACTGACCG GGCTGACCAA CCGCCTGGGC TTCCGCGAAG GGCTGGATCA TCTGCTCAAC ACCGCCCGCA GCACCGGCAG CAAGCTGGCA CTGCTGTTCG CCGATATCGA CGACTTCAAA CGCGTCAACG ACACGCTCGG CCACGAAGCC GGCGACGAAG CCTTGCTGCA GTTCGCCAGC CGCATCAGCC GCGCGGTGGC TGCGTTGGGC GACGACGATG CGATTCTGGC GCGTTTCGGT GGCGATGAGT TCGTGATGCT GTTGCAGAGC GGCGACGTCA GCCTGCTGGC CGCGCAGTTG GCCGAGCGCC TGGTGCATGA GCTGAGCCGG CCGTTGAACG TGCAGGGCCG CGAGGTGTTC CTGGGCACTT CGATCGGCAT CACGCTGTTC CCGGACGATG CCCGCGATGC CACCGCGCTG CTGAAGAATG GCGACATCGC GATGTACCAG GCCAAGGTAG CCGGAAAGAA TTGCCATCGC TTCTACAGCC GCGCTGCCGA TCATGCCGTC GAGCGCCGCG TGCGCATGGA GCACGAGTTG CGCGGGGCCT GGGAACGCGA CGAGCTGCTG CTGGTCTATC AGCCGATCTA TCGCACAAGC GACCGCGTGC TGGTGGGCGT GGAAGTGCTG TTGCGCTGGC AGCATCCGAC ACTCGGGACG ATTGCACCGT CTACGTTTAT CGATATTGCC GAGCAGAGCG GCCTGATCGA AGTGATCGGC CCCAAGGTGC TGCGCGCAGC ATGCCTGGAG GCGGCGCAAT GGCCGTTGGT GGGCGAAGGC CTGTTTGTGT CAGTCAATGT GTCCCCGCGG CAGTTGCGCA GTGGCGATTT GATCGACACC GTGGCCCAAT GCCTGGCCGA GTCGGGATTG CCGGCCGCGC GCCTGCATCT GGAACTCACC GAGACCGCGG TGATCGGCGA CGAAATGATG GCCGCCCGCT TGCTTGATCA ACTGCACCGC ACCGGCGTGA AGGTGTGGCT GGACGACTTC GGCACCGGCT TCTCCGGCCT GAGCCATTTG CGCCAGGTGC CGGTGGACGG GGTCAAGATC GACAAGAGTT TCATCGCCGA CCTGCAGCGC GACCCGGACG ATTTGGCCCT GACCACTGCG ATCATCAACA TGGCGCATTC GCTGGGAATT ACCGTCGTTG CCGAAGGCAT CGAGCAGGAA GCGCAATTCA ATCTGCTACG CGAGCGCGGC TGCGATCTGG GTCAGGGTTA CTGGTTCAGC CGGCCATTGA GCCCGGCCGA TATGGTCAAG CTGATCGCAG CAGGCTGA
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Protein sequence | MTQLRFGLQA RFLLVMALTL LLVGTILASL LQRQSAMQRE VRGLSAQILH ELFDRSLRTR GETLATELAS GLANPVYYSD LGAVGALVRN AMRQQVVSYV LVFDRHGRLV HDGTPTLQRY GQAMTDPLAA KALAAQKMVL QYSPEVLDVT VPIKIGDQRI GGVRVGMSRE RVRKIESGAN LTLVQNLNAI GKRDLGWLLV LLAALVGLGV LLAIYVQRTL VAPVRLLAAA AKQIERGDYA VQLPPHPRND EIGELISAFG RMSESIARHD REVRHMAYTD ALTGLTNRLG FREGLDHLLN TARSTGSKLA LLFADIDDFK RVNDTLGHEA GDEALLQFAS RISRAVAALG DDDAILARFG GDEFVMLLQS GDVSLLAAQL AERLVHELSR PLNVQGREVF LGTSIGITLF PDDARDATAL LKNGDIAMYQ AKVAGKNCHR FYSRAADHAV ERRVRMEHEL RGAWERDELL LVYQPIYRTS DRVLVGVEVL LRWQHPTLGT IAPSTFIDIA EQSGLIEVIG PKVLRAACLE AAQWPLVGEG LFVSVNVSPR QLRSGDLIDT VAQCLAESGL PAARLHLELT ETAVIGDEMM AARLLDQLHR TGVKVWLDDF GTGFSGLSHL RQVPVDGVKI DKSFIADLQR DPDDLALTTA IINMAHSLGI TVVAEGIEQE AQFNLLRERG CDLGQGYWFS RPLSPADMVK LIAAG
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