Gene PXO_00334 details

Gene Information

• Locus tag: PXO_00334
• Symbol: cydD
• ID: 6305526
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 2063608
• End bp: 2065305
• Gene Length: 1698 bp
• Protein Length: 565 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 642639294
• Product: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD
• Protein accession: YP_001913165
• Protein GI: 188576236
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
• TIGRFAM ID: [TIGR02857] thiol reductant ABC exporter, CydD subunit

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.418277
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCAAACCA GCGAAACGCC CGCCCAGCGC CGTCAACGCG GCCAATGGCT GGATGCGCTT 
GCCGTACCGG CTACGCGCGC GCGGCGGCTT GCCGGCGTGG CGGTCGCGTT GTCGGGGGCG 
TTGCTGCTGG TGCAATCGGC AGCGATCGCC TGGCTGGTGC AGGCGGTGCT GGTGCAGCAC 
CTGGCATTGG CGCAGTTGCG CAACGTGGGC GCGGGCTTGC TGGTTGCGCT GATCGGACGC 
GCGCTGCTGA ACGCCTGGGC GCAAGCGCTG GTCGGTACGG TGGCCGATGT AGCCAGACGC 
GAACTGCGCG CACGCATCGC GCGACGCTTG GTGCAGCACG GGCCGCTGTG GTTGCGCCGA 
CAACGCAGCG GCGAACTGGG CGAACTGAGC CTGGCGCACA CCGACGCGCT GGAAGGGTAT 
TTCGTCGGTT ACCAGTTCGC ACGCACTGAG ATGCTGCTGG TGCCGCCCCT GATCCTGATT 
GCGGTATTTT CGGTCGATTG GGTGGTCGGG CTGGTGTTGT TGCTCACCGC GCCGCTGATT 
CCGTTCTTCA TGATGCTGGT GGGGTGGGGC GCCGAGGCCG CAGGCCGCGA ACAACTCGGC 
GAGCTGGCGC GCATGGGGGG ACACTTTGCC GATCGCCTCA AGGGCCTGGG ATTGCTGCGC 
GTCTATGGCC GCGGCGAGGC TGAGTTGCAG GGCATTGCCG CCGCGGCCGA GGGCGTGCGC 
GAGCGTTCGC TGAAAGTGCT GCGCATCGCG TTTTTATCGT CCACAGTGCT GGAATTCTTT 
GCTTCGGTGA GCGTCGCCAT CGTGGCGCTG TATTTCGGCC TGAGTTATCT CGGCATGCTC 
GAATTGCACG GCCTGCCGTC GCTGGGTGCG GGCATGTTTT GCCTGCTGTT GGCACCGGAA 
TTCTTCGCGC CGCTGCGGCG GCTGGCCGCG CACTACCACG ACCGCGCAAA CGCCTTGGCC 
GCAGTGGCCG AGGCCGAGCG GTTGCTGCAG GGTTTCGAGC CGCCTGCCGC TACGCACACC 
GTTGCGCTAT CAGCACACGT GTTGGAACCA GCGCAAGCGC ATGCGCCCTT GTTGCAAGCG 
CGTGGACTGG CGCTGCGTCC TGCTGGCGCA CCGCAGGTGG TGGTCGAGGA TGTTGCGTTG 
ACGCTGGAGC CCGGGCAGCG TGTCGCCGTG ATCGGCGCCA GTGGCAGCGG CAAGAGCACG 
CTGTTGGAAG GGCTTGCCGG CTGGCTCGCA CCCGAGGCGG GCAGTGTGGT GGTACGTCCC 
GGTGCGCGCA TCGGCTATGC CACGCAGCGT CCCTATCTGT TTCACGGCAG CATTGCCGAT 
AACTTGCGTC TCGCCGACCC GCAGGCCAGC GACGCGCGGC TGCACGCGGT GGCGGAGGCG 
GCGCAGGTGC TGCGTTTTGC CGCGCAACTG CCGGCTGGTC TGGATACGCT GATCGGTGAG 
CGTGGTTTTG GCCTGTCCGG TGGCGAGGCG CGCCGTGTGG CCTTGGCGCG GTTGTTGTTG 
CGCGAGCCGG ATGTGTTGTT GTTGGACGAG CCCACTGCTT TTCTGGATCC AGAGACCGAA 
GCGGAATTGC TGCGCACGCT GGGCGTTTTC GCACGTGGCC GCGCGGTGCT TCTGGCCACG 
CACAGTGCTG CGGCGATGCG TTGGGCCGAC ACGGTGATCG ACCTGCGCGG CGCCACGGTG 
ACGGCGGAGT TGCCATGA 

 

Protein sequence

MQTSETPAQR RQRGQWLDAL AVPATRARRL AGVAVALSGA LLLVQSAAIA WLVQAVLVQH 
LALAQLRNVG AGLLVALIGR ALLNAWAQAL VGTVADVARR ELRARIARRL VQHGPLWLRR 
QRSGELGELS LAHTDALEGY FVGYQFARTE MLLVPPLILI AVFSVDWVVG LVLLLTAPLI 
PFFMMLVGWG AEAAGREQLG ELARMGGHFA DRLKGLGLLR VYGRGEAELQ GIAAAAEGVR 
ERSLKVLRIA FLSSTVLEFF ASVSVAIVAL YFGLSYLGML ELHGLPSLGA GMFCLLLAPE 
FFAPLRRLAA HYHDRANALA AVAEAERLLQ GFEPPAATHT VALSAHVLEP AQAHAPLLQA 
RGLALRPAGA PQVVVEDVAL TLEPGQRVAV IGASGSGKST LLEGLAGWLA PEAGSVVVRP 
GARIGYATQR PYLFHGSIAD NLRLADPQAS DARLHAVAEA AQVLRFAAQL PAGLDTLIGE 
RGFGLSGGEA RRVALARLLL REPDVLLLDE PTAFLDPETE AELLRTLGVF ARGRAVLLAT 
HSAAAMRWAD TVIDLRGATV TAELP