| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00285 |
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| Symbol | rhsD |
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| ID | 6305071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 1563623 |
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| End bp | 1567909 |
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| Gene Length | 4287 bp |
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| Protein Length | 1428 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642638843 |
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| Product | RhsD protein |
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| Protein accession | YP_001912719 |
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| Protein GI | 188575790 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0673678 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACCG CCGCCAAACA TTTCGATCCG CAGTTGGGCA TCGACATCCA CATGTATGCG
ATGCCGCCAT TTCCGCTGCC GACGCCGCAT ATCGGCCTGG TACTGGATCC GTTCGACTAT
CTGCCGTTCC TCGGCGCCAC GGTCACCGTC AACGGGGTCA AACGCGCCAC TGCGGGCACC
GGCGGGCTGG ATATCCATAT TCCGCTGGGC ATGTGGACGC CGCAGCTGAG CATGCCGATG
GGGCCGCAGT TCGACGGCGA AGAGATCTTC ATGGGCAGCA AGACCGTCAC CGCCGATGGC
GACCCGTTTT CGCGGCTTGC TGCGCCGGTG CTGGATTGCA ATCTGGCCGG GCTGATTCCG
CCGTTCCGCA TCAAGAAGCT CAAGAAGCCG TTCCGGTCGC TGTGGCTGCC GACCGGCATC
AACGTCGCGA TTCCCACCAA CGTCAAGGTG GGTGGCCCGC TGACGATCTC ACTGATGGCG
ATGCTCTTCC ACGCGGCCTT CGCCGGCCTG GGAGCGCTGC GTCGCTCCAA GCTGGGCGCG
CGCGCGGCGC AGGCGTTCAA GGGCCTGCGG CAGCGGGTGT TCAAGCACAT GGATTCGGGG
TTCCTCAAGT GCAAGGTGCT GCGCGCCGAG CCGGTGGATA TCCGCGACGG TAGCGTGTCG
GTGCTGCACG AAGACTTCGC CATTCCCGGC CGCCTGCCGT TGACCTGGAC GCGCCGTTAC
AGCTCGGCGC AGACCGAGCA GGCGGGCGTC TGCGGTCACG GTTGGCAGAC GCCCGGCGAC
ATCCGCCTGG AGATCGAGGC CGACGGCGTG GTGCTGTTCC ATGATGGCCG CGGCGCGGCG
GTGTTCCCGC AGTTGCCGGA CGCGACGACC AGCGAGGTGC GCGAGTTCGT CGATGGCGCG
CGGCTGTCGC GGGAAGGAGC GGATTTATTG GTCCGCACCA AGGACGACAC GCGCTACCGC
TTCGTCGATC TGCCGGCGGC GGGCGTTGCG GTGTTGCCGC GTGCGCGCAG TCTGCCGATC
GTGCAGGTCG AAGATGCCTG CGGCAATCAC TGGCGCTTCG AGCGCCGCGA TGGCCACCTG
GTGCGCATAG TGGAGAGCGG CGCGGACGGC GTGCAAGGCC GCTTCATCGA GGTGGAGGCG
CGGCATGGAC GGATCGATCG ATTGCAGTTG CACGATCCGG CGACCGGCTT GACGCATCCG
CTGGTGGCCT ATCGCTACAC GGATGGCGAC CTGGTCGCTG CCGAGGACGC GCTCGGCGCA
CCGCGCAGGT TCGTCTACCG CCAGCACCGC CTGCTGCAGC ACACCGACCG GGTGGGCCTG
TCGTTCTATT ACGACTACGA CCGGCAGTGG CGCGTGGTGC ATAGCTGGGG CGACGGCGGC
TTGTACGACT ACCGCTTCGC CTATGACGAC CTGCTGCGCG AGACCGCAGT GACCGATTCG
CTGGGACATG TCTCGTTGGT GAAGTTCGAC GAGAACCGCC TGCCGTTGTG CGAGATCGAC
CCGATGGACG GCGTCACCGT GTTCGCGTAT GACGCGGTTG GCCGCACCGT GGCGGTCACC
GATCCGGAAG GGCTGTGCAC ACGCTTCGAC TATGACGAGC GCGGCAATCT GCGCACGCTC
ACGCGCCCGG ACGGCAGCAC GCTGCGCCAG ACCTTCGATG ACGACGACCG CCTGATCGCC
GTCGCCGATC CGGATGGCCA TGCCTGGCAG CAGCGCCACG ACGCGCGTGG CTTGCTGGTG
GAGCAGACCG ATCCACTGGG AGCAACGGCG CAGTATGTCT ACGACGATCA TGGCCAGCTG
CGCGCGCACA CCAATGCCCG CGGCGCGACC ACGCGACTGG AGTACGACCG CTACGGCCTG
CTGGCCGCGT TGATCGATGC GCTGGGGCAG CGCAGCCACT TCGCGCACGA TGCACTGGGC
CGGCTGCGCA GCCAGTACGA TCCGCTCGGC CATGCCAGCA CGTACGAGTA CGACGCCAAG
GGAAGGCTGG TGCGGCTGCG CTCGCCCGGC GGCGGCGAGG TGCAGTGCGA GTACGACGCC
GAAGACCAGC TTGTCCGTTA TGTGGACGAA GCGGGCGCGC AGACCCGGCT GCAGTACGTC
GGCATCGGCC AGATCGGCAA GCGTCTGCAG GCCGACGGGC ACACGGTGGA GTATCGCTAC
GACAGCGAGG AACAGCTGGT CGCGGTGATC AACCAGCGTG GCGAACGCTA TGAGCTCAAG
CGCGATGCGC TGGGCCGCAT CGTCGAGGAA GTGGATTACT GGGGCCAAGC CCGCCGCTAC
GACTACGACG CCTGCGGCCG TCTGACCGCG ACCCACGATC CGCTCGGTCA GCGCATCGCC
TATGCCACCG ACAAGCTGGG CCGGATCGTG CGCAAGACGC TGGCCGACGT GCGCCAGCCG
GGCCAGCAGC TGCAGGAGCA TTTCGTCTAC GACCGGCGCG GGCAACTGGT CGAATTGCGC
AACCCGCATC GCAGCGCCAC CCGTCGCTTC GATGCCTTGG GCCAGCTGCT GGAAGAAGTG
CAGGACGGGT TCCGGGTCGG CTACGGCTAC GACGCGGTGG GCAATCGCGT CTTGCGCGAG
ACCTCGGCCG GCAATCGCGT CGCCTTCGGC TACGACCTGC GCGACCAGGT GGTCTCGGTG
GCGATCAACG ACGACGCCCC GCTCCTGATC GAGCGCGACG CGCTTGGGCG CGCCACCCGC
GAACAACTCA GCGCGCAGGT CGAACGCCGT TTCGCCTACG ACGGCCGCAG CCTGCTCACC
GCCCAGGCGG TGCTCAAGGA CGCGGTGCCG CTGTTCGAAA CCCACTACGA CTACGATCGC
GCCGGCAACC TGACCCACCG CCGCGACAGC GTGCAAGGCG TGGACGAGTA TCGCTACGAC
GCCATCGGAC GGCTGCTGCA GCACACTGAC CCGAAGGGCA AGATCGAACG TTTCTTCAAT
GACCCGGCCG GCGACCGCCT GGCCACACGC GTCCAGCAGG TGCAACTGCG CAAGGTGGTC
GGCGGCGACG ACGAACAGCA GGTGCAATGG ACCCGCGAGG GCACGTACGA CGGCGTGCAC
TACGTCTTCG ATCGCGCCGG CGACCTGATT CGCAAGGGCA GCCCCCACGG CCCCGCACCC
GACGACCTGG AACTGTGCTG GGACGCCAAC CACCGCCTGG CCGAAAGCCG CAAAGCCGGG
CAAACCACCT ACTACGGCTA CGACCCGCTG GGCAGACGGG TGTTCAAGCG CAACCCGACC
CACACCACAT GGTTTTACTG GGACGGCGAC GCCTTGCTGG GCGAAGTGAA GCACGCCAAC
GACGACCCGG ACGCCGCCCC AGTCTGGATC GGCAATGTCG CGAACCTGAT CGAGGTCAAG
CGCCGCAAGG AGAAACTCGC CAAGTTGCAT GAGCGGGTGC GGGAGTATGT GTATTACCCC
GGGACGTTTG TGCCGTTGGG ATTGATCGAG AAGGAGCCCC AGGGTAGATC TACATCCGCT
CTTGCGGAGC AAACTAATGA AAGTATTCCC AGTATACATG TTGCTGCGAG TCCCCCCGAG
GTCATAGTCG CCAGTTCGAA TACTTCCTTT AAGCCGGTCG CTAAACCCTC TGGAAGTATG
GGAGTGCTTG GCAGAGGTGC AAAGGCGGGT GACCAGTCTT CCTTGGAAGT GAAAGGCAAG
GGAAATAAAA ATGGCTTTCC CGCCCTCGGA AAAATGGTGC TTGGTTCAAG CTTACAGGAG
GGAGTTTCCC TCTCAAGCGC TGCATCCGGA GTCAAGGTAA ATGCAGTCGG CTCGGTTGAA
AGTATAGAGT CGAACGGCGA CGTAAATGCT GCTTTCAAAG AGTCTCAGGG GGCGGAATCT
TTGGGGGCGA TAGCGTATCT TTACTGTGTG GATGTAAATG GATGTCCGCG AAGAATTTTA
AAAGAAAATG GCGATATTGT CTGGTCGGCT AGCTACTCCG TCGTAGGGGC GGCCCAGCCA
GATGGGTGGG GGCTCTTGGA GAACAACATT CGATTGCAGG GGCAGTATCT GGATTCGGAA
ACTGGGCTCA ATTATAACCG GCATAGATAT TATGATTATC AATCGGCGCA ATTCATTTCC
AATGATTCGC TGCGATTGGC TGCGGGTGAA AACTTGTATT TCTATGCGCC TAACAATCAA
GTTTGGGCAG ATCCGTTAGG GCTGCACTCA ATCCAGGTCA CTTATGGAAG TACTGACCTG
AGTGAGATGG CTCAACTTCA CCGCATGGAC ATGGGGATTA CCGGTGGTCA GAACGTTGCG
GTTTTCGAAT ATTTAGGGAA CCTCTGA
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| Protein sequence | MSTAAKHFDP QLGIDIHMYA MPPFPLPTPH IGLVLDPFDY LPFLGATVTV NGVKRATAGT
GGLDIHIPLG MWTPQLSMPM GPQFDGEEIF MGSKTVTADG DPFSRLAAPV LDCNLAGLIP
PFRIKKLKKP FRSLWLPTGI NVAIPTNVKV GGPLTISLMA MLFHAAFAGL GALRRSKLGA
RAAQAFKGLR QRVFKHMDSG FLKCKVLRAE PVDIRDGSVS VLHEDFAIPG RLPLTWTRRY
SSAQTEQAGV CGHGWQTPGD IRLEIEADGV VLFHDGRGAA VFPQLPDATT SEVREFVDGA
RLSREGADLL VRTKDDTRYR FVDLPAAGVA VLPRARSLPI VQVEDACGNH WRFERRDGHL
VRIVESGADG VQGRFIEVEA RHGRIDRLQL HDPATGLTHP LVAYRYTDGD LVAAEDALGA
PRRFVYRQHR LLQHTDRVGL SFYYDYDRQW RVVHSWGDGG LYDYRFAYDD LLRETAVTDS
LGHVSLVKFD ENRLPLCEID PMDGVTVFAY DAVGRTVAVT DPEGLCTRFD YDERGNLRTL
TRPDGSTLRQ TFDDDDRLIA VADPDGHAWQ QRHDARGLLV EQTDPLGATA QYVYDDHGQL
RAHTNARGAT TRLEYDRYGL LAALIDALGQ RSHFAHDALG RLRSQYDPLG HASTYEYDAK
GRLVRLRSPG GGEVQCEYDA EDQLVRYVDE AGAQTRLQYV GIGQIGKRLQ ADGHTVEYRY
DSEEQLVAVI NQRGERYELK RDALGRIVEE VDYWGQARRY DYDACGRLTA THDPLGQRIA
YATDKLGRIV RKTLADVRQP GQQLQEHFVY DRRGQLVELR NPHRSATRRF DALGQLLEEV
QDGFRVGYGY DAVGNRVLRE TSAGNRVAFG YDLRDQVVSV AINDDAPLLI ERDALGRATR
EQLSAQVERR FAYDGRSLLT AQAVLKDAVP LFETHYDYDR AGNLTHRRDS VQGVDEYRYD
AIGRLLQHTD PKGKIERFFN DPAGDRLATR VQQVQLRKVV GGDDEQQVQW TREGTYDGVH
YVFDRAGDLI RKGSPHGPAP DDLELCWDAN HRLAESRKAG QTTYYGYDPL GRRVFKRNPT
HTTWFYWDGD ALLGEVKHAN DDPDAAPVWI GNVANLIEVK RRKEKLAKLH ERVREYVYYP
GTFVPLGLIE KEPQGRSTSA LAEQTNESIP SIHVAASPPE VIVASSNTSF KPVAKPSGSM
GVLGRGAKAG DQSSLEVKGK GNKNGFPALG KMVLGSSLQE GVSLSSAASG VKVNAVGSVE
SIESNGDVNA AFKESQGAES LGAIAYLYCV DVNGCPRRIL KENGDIVWSA SYSVVGAAQP
DGWGLLENNI RLQGQYLDSE TGLNYNRHRY YDYQSAQFIS NDSLRLAAGE NLYFYAPNNQ
VWADPLGLHS IQVTYGSTDL SEMAQLHRMD MGITGGQNVA VFEYLGNL
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