Gene PXO_00252 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_00252 
SymbolimpJ 
ID6305103 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand
Start bp1608357 
End bp1609694 
Gene Length1338 bp 
Protein Length445 aa 
Translation table11 
GC content67% 
IMG OID642638874 
ProductImpJ 
Protein accessionYP_001912750 
Protein GI188575821 
COG category[S] Function unknown 
COG ID[COG3522] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03353] type VI secretion protein, VC_A0114 family 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCCTT ACAACAAGGT GATCTGGAGC GAGGGCCTGT TCCTGCGCCC GCAGCACCTG 
CAACAACAGG AGCGCTATCT GGAGCGCTAC ATGGAACTGC ATGCCGGTGC GCTCCGGCCG
CATGCGTGGG GTTTCAGCGT ACTGGAGCTG GAGCCGGAAT TGCTGTCCAT CGGCAAGCTC
GGCATCCGGC GCGCCCGCGG CTGCTTTCCC GATGGCACGC CGTTTTCCAT TCCCGATCGC
GATCCGGCAC CGCCGCCGTT GGACGTGCCG GCCAACTGCC GCGACCAGGT GGTGAGTCTG
GCGCTGCCGC TGCGCGCGAC CACGCAGCCC GATAGCACCT GGCCGGATGG CGACGGCAGC
CGGCTGGCCC GTTATCGCGT GGGCGAAGCG GAGGTCGGCG ATTCGTCCGG CAGCATCGCC
GGCACGGTCC TGCTGGAAGT CGGCGTGCTG GCCAGTCGCC TACGCCTGCA GTCCGAACCG
GGGGAGGGGC TGGTGGAGGT GCCGATGGCG CGCATTGTCG AGTGCCGCGC CGATCGACGG
GTGATTCTCG ATGATGCCTT CATCCCGACC GCCATCCGCA TCGAAGGCGC CGCGCGGTTG
TCCATGCTGC TGGCCGAATT GCTTGGGCTA TTGCATCAAC GCGGCCAGGC GCTGGCCGAC
CGCGTGGCCG GCAGCGACCG TCGCGGCGTG GCGGAAATCG CAGACGTGCT GATGTTGCAG
GTGATCAATC GCTACCAGCC GCTGGTGGCG CATTGGGCAA GCGCGCCGCT GGAGCATCCG
GAAGCGCTGT ATTGCGTGCT GCTGGGGATG GCTGGCGAAC TCGCGACCTT CACCCGTGCC
AGTAAACGCA GCGGGCCATT TCCGCCGTAC GCACACGATG CGCTGCAGGC GAGCTTCGAG
CCGGTGGTGG TGTCCTTGCG CGAAAGCTTG AGCGCGGTGC TCGAACAGTC GGCGATTGCC
GTGCCCTTGC AGCAACGCAA ATACGGCGTG TGGGTGGGCA TGGTGCCCGA TCCGGCCTTG
CTGGACGCGG CGGCCTTCGT GCTGGCAGTC AAGGCGGATC TGCGCGCCGA GGATCTGCGC
AAGCGGCTAC CCGCCGAATC GAAGATCGGC CCGGTGGAGA AGATTCGCGA CCTGGTGAAC
CTGCAACTGC CCGGGGTGGC CGTGAGTGCG CTGGCGATGG CACCGCGGCA GGTGCCGTAT
CACGCCGGCT GCGCCTACTT CGAACTCGAT CGGCAATCGT CGCTGTGGAA GACGCTGCGC
ACGTCCGGTG GCGTGGCGCT GCATTTCGGC AGTGGTTTTC CCGGCCTGGA ACTTGAGTTG
TGGGCGGTGA GGAATTGA
 
Protein sequence
MTPYNKVIWS EGLFLRPQHL QQQERYLERY MELHAGALRP HAWGFSVLEL EPELLSIGKL 
GIRRARGCFP DGTPFSIPDR DPAPPPLDVP ANCRDQVVSL ALPLRATTQP DSTWPDGDGS
RLARYRVGEA EVGDSSGSIA GTVLLEVGVL ASRLRLQSEP GEGLVEVPMA RIVECRADRR
VILDDAFIPT AIRIEGAARL SMLLAELLGL LHQRGQALAD RVAGSDRRGV AEIADVLMLQ
VINRYQPLVA HWASAPLEHP EALYCVLLGM AGELATFTRA SKRSGPFPPY AHDALQASFE
PVVVSLRESL SAVLEQSAIA VPLQQRKYGV WVGMVPDPAL LDAAAFVLAV KADLRAEDLR
KRLPAESKIG PVEKIRDLVN LQLPGVAVSA LAMAPRQVPY HAGCAYFELD RQSSLWKTLR
TSGGVALHFG SGFPGLELEL WAVRN