Gene PXO_00251 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_00251 
SymbolompA 
ID6305104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand
Start bp1609696 
End bp1611012 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content70% 
IMG OID642638875 
ProductOmpA family membrane protein 
Protein accessionYP_001912751 
Protein GI188575822 
COG category[M] Cell wall/membrane/envelope biogenesis
[S] Function unknown 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3455] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAAGA CGGTCGACCA GCACGACGAC GATGCCACCG TGGTCCGCAG CGCGACGCCG 
GCGCCGCGGC CCGCCGCATC CATGCCGCCC CGCCAAGCAC CGACGCGGAC GAGGCGACCG
CCCGATCTGG ATGCCGCCAT GCGCGCGACG CCAGGTGCGA TGCAGGGCAA TGCGGTGGTG
CGCGCAGCCA CGCCGCTGCT GCTGCTGGCG GTGCAGTTGC GACACTCCGC GCAGACGCCG
GAGATCGCCA CCTTGCGCGA GAACTGCGTC ACGCGCCTGC AGCACTTCGA GCAGGAGCTG
CGGCAACAGG GCACCGACGA CAAGACCGGC ATCGCCGCGC GCTACGTGCT GTGCACGTTG
CTCGACGAAG CGGTGCTGGC CGCGCCCTGG GGCGAGGCCA GCGGCTGGTC GCAGCGCACT
TTGCTGGTGA CGTTCCACGG CGAAACCTAT GGCGGCGCCA AGGTCTTCGA CCTGCTCGAT
CGGCTGGCAC GCGATCCGGC GCGGCACCTG GACCTGCTGG AGCTGCTGTA CCTGGCATTG
GCGCTGGGCT TTGGTGGCCG CTATCGGGTG GAGCAGGGTG GTGGGGCACG GCTGGCCGAT
CGCCAGGCCG AGCTCTACCA ACTCATCCAG CGTCAGCGCT TGCCTGCGCC TGCCGAGTTG
TCGCCGCATT GGCAAGGCGC GCAGGCGCCG TTGCTGCGCA ATGCAGCGGC CACGCCGCTG
TGGATCGCGG CGCTGGCCTC GCTGTGCATC GTGTTGCTGG CGTTCGTGTG GTTGCATGCG
CGCCTCAATA CGCTGACCGC GCCGATCAGC GCGCAGCTGG CGCGCATCGG CCTGGAGCGG
GTGGCGTTGC CGATCCCGGC GGCAGTCAGA GCGGCGACCA TACCGGCGCT TGCACCGCTG
CTGGCGGCCG AGCAACGCGC AGGGTTGCTG ACCGTCCACA CCGACGGCGA TGGCCGCAGC
ACCGTGCGCC TGGCCAGCGC ATCCATGTTC CCCAGCGGCA GCGCGGAGTT GGATGCCGAT
CAGACCCACC TGCTCGAACG CGTTGCTGCG GCGCTTGAAC AGGTGCCGGG GCGGGTGGTG
GTGGTGGGGC ATACCGACGA TCAGCCGGTG CGCTCGCTGC GCTTCAAGGA CAACTTCGCC
TTATCCGCAC GTCGCGCAGA GAGCGTGGGC GCCGTGTTGG CGGCAGGCCT GCGCGATCGA
CGCCGGGTAC AGACCAGTGG CGCGGGCGAT TCCCAGCCCA TCGCGCTACC GCCGCAATTG
CCCGGCAACC GTGCGCGCAA TCGGCGCGTC GAGATCCTGT TGATTCCCGA GACCTGA
 
Protein sequence
MSKTVDQHDD DATVVRSATP APRPAASMPP RQAPTRTRRP PDLDAAMRAT PGAMQGNAVV 
RAATPLLLLA VQLRHSAQTP EIATLRENCV TRLQHFEQEL RQQGTDDKTG IAARYVLCTL
LDEAVLAAPW GEASGWSQRT LLVTFHGETY GGAKVFDLLD RLARDPARHL DLLELLYLAL
ALGFGGRYRV EQGGGARLAD RQAELYQLIQ RQRLPAPAEL SPHWQGAQAP LLRNAAATPL
WIAALASLCI VLLAFVWLHA RLNTLTAPIS AQLARIGLER VALPIPAAVR AATIPALAPL
LAAEQRAGLL TVHTDGDGRS TVRLASASMF PSGSAELDAD QTHLLERVAA ALEQVPGRVV
VVGHTDDQPV RSLRFKDNFA LSARRAESVG AVLAAGLRDR RRVQTSGAGD SQPIALPPQL
PGNRARNRRV EILLIPET