Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_00251 |
Symbol | ompA |
ID | 6305104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 1609696 |
End bp | 1611012 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 642638875 |
Product | OmpA family membrane protein |
Protein accession | YP_001912751 |
Protein GI | 188575822 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins [COG3455] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family [TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAGA CGGTCGACCA GCACGACGAC GATGCCACCG TGGTCCGCAG CGCGACGCCG GCGCCGCGGC CCGCCGCATC CATGCCGCCC CGCCAAGCAC CGACGCGGAC GAGGCGACCG CCCGATCTGG ATGCCGCCAT GCGCGCGACG CCAGGTGCGA TGCAGGGCAA TGCGGTGGTG CGCGCAGCCA CGCCGCTGCT GCTGCTGGCG GTGCAGTTGC GACACTCCGC GCAGACGCCG GAGATCGCCA CCTTGCGCGA GAACTGCGTC ACGCGCCTGC AGCACTTCGA GCAGGAGCTG CGGCAACAGG GCACCGACGA CAAGACCGGC ATCGCCGCGC GCTACGTGCT GTGCACGTTG CTCGACGAAG CGGTGCTGGC CGCGCCCTGG GGCGAGGCCA GCGGCTGGTC GCAGCGCACT TTGCTGGTGA CGTTCCACGG CGAAACCTAT GGCGGCGCCA AGGTCTTCGA CCTGCTCGAT CGGCTGGCAC GCGATCCGGC GCGGCACCTG GACCTGCTGG AGCTGCTGTA CCTGGCATTG GCGCTGGGCT TTGGTGGCCG CTATCGGGTG GAGCAGGGTG GTGGGGCACG GCTGGCCGAT CGCCAGGCCG AGCTCTACCA ACTCATCCAG CGTCAGCGCT TGCCTGCGCC TGCCGAGTTG TCGCCGCATT GGCAAGGCGC GCAGGCGCCG TTGCTGCGCA ATGCAGCGGC CACGCCGCTG TGGATCGCGG CGCTGGCCTC GCTGTGCATC GTGTTGCTGG CGTTCGTGTG GTTGCATGCG CGCCTCAATA CGCTGACCGC GCCGATCAGC GCGCAGCTGG CGCGCATCGG CCTGGAGCGG GTGGCGTTGC CGATCCCGGC GGCAGTCAGA GCGGCGACCA TACCGGCGCT TGCACCGCTG CTGGCGGCCG AGCAACGCGC AGGGTTGCTG ACCGTCCACA CCGACGGCGA TGGCCGCAGC ACCGTGCGCC TGGCCAGCGC ATCCATGTTC CCCAGCGGCA GCGCGGAGTT GGATGCCGAT CAGACCCACC TGCTCGAACG CGTTGCTGCG GCGCTTGAAC AGGTGCCGGG GCGGGTGGTG GTGGTGGGGC ATACCGACGA TCAGCCGGTG CGCTCGCTGC GCTTCAAGGA CAACTTCGCC TTATCCGCAC GTCGCGCAGA GAGCGTGGGC GCCGTGTTGG CGGCAGGCCT GCGCGATCGA CGCCGGGTAC AGACCAGTGG CGCGGGCGAT TCCCAGCCCA TCGCGCTACC GCCGCAATTG CCCGGCAACC GTGCGCGCAA TCGGCGCGTC GAGATCCTGT TGATTCCCGA GACCTGA
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Protein sequence | MSKTVDQHDD DATVVRSATP APRPAASMPP RQAPTRTRRP PDLDAAMRAT PGAMQGNAVV RAATPLLLLA VQLRHSAQTP EIATLRENCV TRLQHFEQEL RQQGTDDKTG IAARYVLCTL LDEAVLAAPW GEASGWSQRT LLVTFHGETY GGAKVFDLLD RLARDPARHL DLLELLYLAL ALGFGGRYRV EQGGGARLAD RQAELYQLIQ RQRLPAPAEL SPHWQGAQAP LLRNAAATPL WIAALASLCI VLLAFVWLHA RLNTLTAPIS AQLARIGLER VALPIPAAVR AATIPALAPL LAAEQRAGLL TVHTDGDGRS TVRLASASMF PSGSAELDAD QTHLLERVAA ALEQVPGRVV VVGHTDDQPV RSLRFKDNFA LSARRAESVG AVLAAGLRDR RRVQTSGAGD SQPIALPPQL PGNRARNRRV EILLIPET
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