Gene PXO_00250 details

Gene Information

• Locus tag: PXO_00250
• Symbol: sciS
• ID: 6305105
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 1611016
• End bp: 1614474
• Gene Length: 3459 bp
• Protein Length: 1152 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 642638876
• Product: SciS protein
• Protein accession: YP_001912752
• Protein GI: 188575823
• COG category: [S] Function unknown
• COG ID: [COG3523] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03348] type VI secretion protein IcmF

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCTTTG TGCTCGATTT CCTGCGCGTG CGCTACCTCG CCAGCGCTGC CATCCTCAGT 
CTGTTGGCCC TCCTGGTGTG GGTCGGCGGA CCCTATCTCA GCCTGGGCCG CTGGCAGCCG 
TTTGCCAGCG TGAGCGGGCG CCTGCTTGCC ATGGCCGTGC TGGTGCTCGC GTGGGCAGGG 
TGGCGCTATC TGCGCTGGCG CCGCGACAGC GCCAAGCAGC AACGTCTGGC CGCCGAACTG 
GTCGGGCAGG GAGCACGTGC CGAAGACGCC AGCGGCAACG ACAGTCGCGC GCGTGCAGCA 
CACGAGCAGG TCCGCCTGCG TGCGCGCTTT ACCGAAGCCA TGGCGGTGCT GCGCCGTCGC 
CGTCGCAACG GTCCCGGCCT GCACGTGCTG CCCTGGTATC TGCTGATCGG CGCGCCCGGT 
TCCGGCAAGA GCACCTTGCT GCAGTCTTCG GGCCTGGAGT TCCCCCTCAA GGCACATGGC 
ACCCACGCCG CGCTGGAAGG TGTCGGTGGC ACGCGCAACT GCGATTGGTG GTTCGCCGAC 
CAAGCAGTGT TCCTCGACAG TGCCGGGCGC TATACCACCC AGGATTCGGA CGCCATCGCC 
GATGCCGGTG CCTGGCATGG CTTTCTGGAC CTGCTGCGGC GGCATCGCCG GCAGCCATTG 
AACGGCGTCA TCGTGACCGT GAGCGTGGCC GAGCTGCTGG AGCTCGATGG CGATGCCGGT 
CTGTCGCACG CGCGGGCAGT ACGTCATCGA CTGAACGAAC TGGTCGAGAA ACTGCGCGCA 
CGCGTGCCGG TCTACCTGAT CGTGACCAAA TGCGATCTGG TGTCGGGCTT CGCCGAATTC 
TTCGCCGATC TGGATGCCGC CGGCCGCGCG CAGGTGTGGG GGGTGTCGTT CCCACAGGCG 
CAGGCCGCCG GTGACACCGA TCCGTTGACG CGATTCCCCA CCGAGCTCGA ACGCCTGCTG 
GAGCGGATCG ATCAGCGCGT GCTGGAGCGC CTGCATCGGG CGCGCGATGC ACGCGAGCGT 
GCCGCGGTGC TGTCCTTTCC GCAGCAATTG CGGTTGCTTC AGCCAGCGCT GATGGACGTC 
GTGCAGACCG CGTTCGGCCG CCATGGCTAT GCCGGCCAGC CGTGGCTGCG TGGTGTCTAT 
CTGAGCTCGG GGACGCAGCA AGGCCATCCG ATCGACCACG TCATCTCGGC AGTGGCGCAA 
CACTTCGGTG TTGCCGCCGC CGGTCTGCCG CCCGTCAGCA GCGCACCACG CAGTTACTTC 
CTGTCACGCC TGCTCAAGGA CGTGGTCTTC GCCGAGGCGG GACTGGCCGG CAGCCAACCC 
GGCAGCGCGC AGCGCCGTCG GTTGCTGCAG CTGGCCTGCT GGGCCGTGTT GACCGCCACC 
ACCCTGGGCG TGCTGTCGGG CATGGCCGGC AGTTACGCCC GCAACGTGCG GCTGATCGGG 
CAGGTGCGCG ACGCGCTCGA TGCCTATCCC GCCGGCCCGC TGCCCGCCGA TGCAGGCGAG 
GCGGCCTTCT ATGCAAAAGC CTTGCAGCGT TTCGACGCAT TGGCGCAGGC GCGCGATGCG 
GCGCTGCCGC CGGGCGCGTC GATTCCGTGG TCGCGACGTT TCGGGCTGCA CCAGGGCACG 
GCCTTGGCGC GCGATGTGCA AGAAGCGTAT CTGCGCGACC TCAATGGCGC GTTGCTGCCG 
GCATTGGCGC AATCGCTGCG ACGCAAGCTG GAGCAGTCCA GCAACGATCC GCAACGTCTG 
TATCCATTGT TGAAGGGCTA TCTGATGCTG GGAGACCCGA CACGGCGCGA TGCAATGCAT 
CTGGCCACGC TGGCAGGCAC GGTCTGGCGC CAGATATTTC CCGACGATGC ATCGGTGCGT 
GCGGGGTTGA ACCTGCATCT GCGCGCCTTG CTGGGTCCGG TGGACGGCGC GCGCGCGCTT 
GCGCTGGATC GGCAGCAGAT CGAGCAGACA CGGGCGAGCC TGCGAACCGC CGAACTGCCG 
GCACTGGTCT ACGGTGGCCT CAAGCTGACG CAGCCCGGGG TCGATGCCGG CCAGGCCCCA 
CGCCTGGATC GCCGCCTGGG CCTGCTGAGT GATGTCTTCG AACGCCGCAG TGGCCTGCCG 
TTGTCTGCGC CATTGCCCCC GCTGTTCACC CGTCAAGCGT TTCAAGCACA GATCGGCGGT 
GGCATCGCGC ATGGCGTGCA GCAGTTTCTC GCCGACGATT GGGTGTTGGG CACGGCACCG 
CTGGACCCGT TGGCGCGCTC GCAACTGGAG CGCGAGGTAT TGGCGCTGTA TCAGCGCGAC 
TACATCGCCG CCTGGGACAG CCTGCTGGCC GATCTGGTGT TGCGGCCGGT CGTGCAGACC 
GGGCAGGCGA GTGCGGTGGC CGCCAAGCTG GGTGGACCGG CATCGCCGCT GAAGGCGTTG 
CTGGTGTTGC TGCGCGAGCA CACCCACGCA CTGGGGCGCA CGCCTGCAGC GAAGGCCGGC 
GCGGGCGCTG CAGCTGCCGC GGACACTGCT GCTGCGGCCG AGCCGGATGT GGCAGCCGAA 
CCGATCGAAC GCCATTTCGA ACCGCTCACT CGCCTGCTCG ATGGTGGGCC GGGCGCCAGT 
GCGCTGGACG AAACCCTGGC CGCGCTGACC CAGATGAGCC GCACGCTGTT GGGAGCCGCC 
GCTGGCGTGG CTGCCGACCA GAACGCCCCG GCCTTGCTGA TCGCCGCGCA ACAGGCCGAA 
CAGCTGCCGC CGCCGCTGGG CAACTGGATG GCGACCTTGT CCGGTCGTGG TCGCGCATTG 
ACCGCCAGCA GCGCCGGCGA AGCATTGCGT AACGCGCAAC GGCAAGCCGC CGGGCGTGAG 
TGCGCGCTGC TGGTGAGCGG GCGTTTCCCG TTCGTGCCGG GCAGCAACAA CGAGATCCCG 
CTGCGCGATT TCGCCGAACT GTTCGCACCC GGTGGGCGGA TGGACCGGTT CGCGCAACAG 
GCGTTGCTCG GCAAGGTCGA TACCAGCGGG CCTGGCTGGA AATGGAATGC AGGCATGGCT 
GCGGCTGGCG CAGACGACGT GCTGGCGCGC GCGCAACTGG CCGACGAGAT CAAGCAAGCA 
TTCTTCGCCG GCGGCGGTGC GCAGCCGCAG GTCGCCTTTA CTGTTTCCAT TCCACCGCAA 
GCAGGGATTC GCCGGCTGCA GCTGGAGGTG GATGGGCAAG CGCTGGACGT GCGCGATGGT 
GCGCGCGCCA CCCAGTCGAT GACCTGGCCT GGTCCAACGC CAGGTCTGGT GCGTCTGGCG 
GCGTGGGACG CCAGCGGACA GGCTTTGCCA GTGGTCGAAT ACCGCGGCCC CTGGGCCTGG 
TTTCGGGTCA TGCAGGCCGG GCGGCTGCAC CGCAGCGGCG ATCTGGATTA CACCGCCAGC 
CTCGCGCTGG GCGGCACCAG CGTGCGCGTG GACATACAAC CGGCCAGCCT GCGGCATCCC 
TTTGCGGCGT CGGCCGTGCA GCGGTTCAGT TGCCCATGA 

 

Protein sequence

MRFVLDFLRV RYLASAAILS LLALLVWVGG PYLSLGRWQP FASVSGRLLA MAVLVLAWAG 
WRYLRWRRDS AKQQRLAAEL VGQGARAEDA SGNDSRARAA HEQVRLRARF TEAMAVLRRR 
RRNGPGLHVL PWYLLIGAPG SGKSTLLQSS GLEFPLKAHG THAALEGVGG TRNCDWWFAD 
QAVFLDSAGR YTTQDSDAIA DAGAWHGFLD LLRRHRRQPL NGVIVTVSVA ELLELDGDAG 
LSHARAVRHR LNELVEKLRA RVPVYLIVTK CDLVSGFAEF FADLDAAGRA QVWGVSFPQA 
QAAGDTDPLT RFPTELERLL ERIDQRVLER LHRARDARER AAVLSFPQQL RLLQPALMDV 
VQTAFGRHGY AGQPWLRGVY LSSGTQQGHP IDHVISAVAQ HFGVAAAGLP PVSSAPRSYF 
LSRLLKDVVF AEAGLAGSQP GSAQRRRLLQ LACWAVLTAT TLGVLSGMAG SYARNVRLIG 
QVRDALDAYP AGPLPADAGE AAFYAKALQR FDALAQARDA ALPPGASIPW SRRFGLHQGT 
ALARDVQEAY LRDLNGALLP ALAQSLRRKL EQSSNDPQRL YPLLKGYLML GDPTRRDAMH 
LATLAGTVWR QIFPDDASVR AGLNLHLRAL LGPVDGARAL ALDRQQIEQT RASLRTAELP 
ALVYGGLKLT QPGVDAGQAP RLDRRLGLLS DVFERRSGLP LSAPLPPLFT RQAFQAQIGG 
GIAHGVQQFL ADDWVLGTAP LDPLARSQLE REVLALYQRD YIAAWDSLLA DLVLRPVVQT 
GQASAVAAKL GGPASPLKAL LVLLREHTHA LGRTPAAKAG AGAAAAADTA AAAEPDVAAE 
PIERHFEPLT RLLDGGPGAS ALDETLAALT QMSRTLLGAA AGVAADQNAP ALLIAAQQAE 
QLPPPLGNWM ATLSGRGRAL TASSAGEALR NAQRQAAGRE CALLVSGRFP FVPGSNNEIP 
LRDFAELFAP GGRMDRFAQQ ALLGKVDTSG PGWKWNAGMA AAGADDVLAR AQLADEIKQA 
FFAGGGAQPQ VAFTVSIPPQ AGIRRLQLEV DGQALDVRDG ARATQSMTWP GPTPGLVRLA 
AWDASGQALP VVEYRGPWAW FRVMQAGRLH RSGDLDYTAS LALGGTSVRV DIQPASLRHP 
FAASAVQRFS CP