| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00227 |
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| Symbol | pthXo1 |
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| ID | 6305128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 1645240 |
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| End bp | 1649043 |
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| Gene Length | 3804 bp |
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| Protein Length | 1267 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642638899 |
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| Product | TAL effector AvrBs3/PthA |
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| Protein accession | YP_001912775 |
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| Protein GI | 188575846 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.855849 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAATCGG GTCTGCGTGC AGCCGATGAC CCGCCACCCA CCGTGCGTGT CGCTGTCACT
GCCGCGCGGC CGCCGCGCGC CAAGCCGGCC CCGCGACGGC GTGCGGCGCA ACCCTCCGAC
GCTTCGCCGG CCGCGCAGGT GGATCTACGC ACGCTCGGCT ACAGTCAGCA GCAGCAAGAG
AAGATCAAAC CGAAGGTGGG TTCGACAGTG GCGCAGCACC ACGAGGCACT GGTGGGCCAT
GGGTTTACAC ACGCGCACAT CGTTGCGCTC AGCCGACACC CGGCAGCGTT AGGGACCGTC
GCTGTCAAGT ATCAGGACAT GATCGCGGCG TTACCAGAGG CGACACACGA AGACATCGTT
GGTGTCGGCA AACAGTGGTC CGGCGCACGC GCCCTGGAGG CCTTGCTCAC GGTGGCGGGA
GAGTTGAGAG GTCCACCGTT ACAGTTGGAC ACAGGCCAAC TTGTCAAGAT TGCAAAACGT
GGCGGCGTGA CCGCAGTGGA GGCAGTGCAT GCATCGCGCA ATGCACTGAC GGGTGCCCCC
CTGAACCTGA CCCCGGCACA GGTGGTGGCC ATCGCCAGCA ATAACGGTGG CAAGCAGGCG
CTGGAGACGG TGCAGCGGCT GTTGCCGGTG CTGTGCCAGG CCCATGGCCT GACCCCGGCG
CAGGTGGTGG CCATCGCCAG CCACGATGGC GGCAAGCAGG CACTGGAGAC GATGCAGCGG
CTGTTGCCGG TGCTGTGCCA GGCCCATGGC CTGCCCCCGG ACCAGGTGGT GGCCATCGCC
AGCAATATTG GCGGCAAGCA GGCGCTGGAG ACGGTGCAGC GGCTGTTGCC GGTGCTCTGC
CAGGCCCATG GCCTGACCCC GGACCAGGTG GTGGCCATCG CCAGCCATGG CGGCGGCAAG
CAGGCGCTGG AGACGGTGCA GCGGCTGTTG CCGGTGCTCT GCCAGGCCCA TGGCCTGACC
CCGGACCAGG TGGTGGCCAT CGCCAGCCAC GATGGCGGCA AGCAGGCGCT GGAGACGGTG
CAGCGGCTGT TGCCGGTGCT GTGCCAGGCC CATGGCCTGA CCCCGGACCA GGTGGTGGCC
ATCGCCAGCA ATGGCGGCGG CAAGCAGGCG CTGGAGACGG TGCAGCGGCT GTTGCCGGTG
CTGTGCCAGG CCCATGGTCT GACCCCGGAC CAGGTGGTGG CCATCGCCAG CAATGGCGGC
AAGCAGGCGC TGGAGACGGT GCAGCGGCTG TTGCCGGTGC TGTGCCAGGC CCATGGCCTG
ACCCCGGACC AGGTGGTGGC CATCGCCAGC CACGATGGCG GCAAGCAGGC GCTGGAGACG
GTGCAGCGGC TGTTGCCGGT GCTGTGCCAG ACCCATGGTC TGACCCCGGC GCAGGTGGTG
GCCATCGCCA GCCACGATGG CGGCAAGCAG GCGCTGGAGA CGGTGCAGCA GCTGTTGCCG
GTGCTGTGCC AGGCCCATGG CCTGACCCCG GACCAGGTGG TGGCCATCGC CAGCAATATT
GGCGGCAAGC AGGCGCTAGC GACGGTGCAG CGGCTGTTGC CGGTGCTGTG CCAAGCCCAT
GGCCTGACCC CGGACCAGGT GGTGGCCATC GCCAGCAATG GCGGCGGCAA GCAGGCGCTG
GAGACGGTGC AGCGGCTGTT GCCGGTGCTG TGCCAGGCCC ATGGCCTGAC CCCGGACCAG
GTGGTGGCCA TCGCCAGCAA TGGCGGCGGC AAGCAGGCGC TGGAGACGGT GCAGCGGCTG
TTGCCGGTGC TGTGCCAGGC CCATGGTCTG ACCCAGGTGC AGGTGGTGGC CATCGCCAGC
AATATTGGCG GCAAGCAGGC GCTGGAGACG GTGCAGCGGC TGTTGCCGGT GCTGTGCCAG
GCCCATGGCC TGACCCCGGC GCAGGTGGTG GCCATCGCCA GCCACGATGG CGGCAAGCAG
GCGCTGGAGA CGGTGCAGCG GCTGTTGCCG GTGCTGTGCC AGGCCCATGG CCTGACCCCG
GACCAAGTGG TGGCCATCGC CAGCAATGGC GGCGGCAAGC AGGCGCTGGA GACGGTGCAG
CGGCTGTTGC CGGTGCTGTG CCAGGCCCAT GGCCTGACCC AGGAGCAGGT GGTGGCCATC
GCCAGCAATA ACGGCGGCAA GCAGGCGCTG GAGACGGTGC AGCGGCTGTT GCCGGTGCTG
TGCCAGGCCC ATGGCCTGAC CCCGGACCAG GTGGTGGCCA TCGCCAGCAA TGGCGGCGGC
AAGCAGGCGC TGGAGACGGT GCAGCGGCTG TTGCCGGTGC TGTGCCAGGC CCATGGTCTG
ACCCCGGCGC AGGTGGTGGC CATCGCCAGC AATATTGGCG GCAAGCAGGC GCTGGAGACG
GTGCAGCGGC TGTTGCCGGT GCTGTGCCAG GACCATGGCC TGACCCTGGC GCAGGTGGTG
GCCATCGCCA GCAATATTGG CGGCAAGCAG GCGCTGGAGA CGGTGCAGCG GCTGTTGCCG
GTGCTGTGCC AGGCACATGG CCTGACCCAG GACCAGGTGG TGGCCATCGC CAGCAATATT
GGCGGCAAGC AGGCGCTGGA GACGGTGCAG CGGCTGTTGC CGGTGCTGTG CCAGGACCAT
GGCCTGACCC CGGACCAGGT CGTGGCCATC GCCAGCAATA TTGGCGGCAA GCAGGCGCTG
GAGACGGTGC AGCGGCTGTT GCCGGTGCTG TGCCAGGACC ATGGCCTGAC CCTGGACCAG
GTGGTGGCCA TCGCCAGCAA TGGCGGCAAG CAGGCGCTGG AGACGGTGCA GCGGCTGTTG
CCGGTGCTGT GCCAGGACCA TGGACTGACC CCGGACCAGG TCGTGGCCAT CGCCAGCAAT
AGTGGCGGCA AGCAGGCGCT GGAGACGGTG CAGCGGCTGT TGCCGGTGCT GTGCCAGGAC
CATGGCCTGA CCCCGAACCA GGTGGTGGCC ATCGCCAGCA ATGGCGGCAA GCAGGCGCTG
GAGAGCATTG TTGCCCAGTT ATCTCGCCCT GATCCGGCGT TGGCCGCGTT GACCAACGAC
CACCTCGTCG CCTTGGCCTG CCTCGGCGGA CGTCCTGCCA TGGATGCAGT GAAAAAGGGA
TTGCCGCACG CGCCGGAATT GATCAGAAGA GTCAATCGCC GTATTGGCGA ACGCACGTCC
CATCGCGTTG CCGACTACGC GCAAGTGGTT CGCGTGCTGG AGTTTTTCCA GTGCCACTCC
CACCCAGCGT ACGCATTTGA TGAGGCCATG ACGCAGTTCG GGATGAGCAG GAACGGGTTG
GTACAGCTCT TTCGCAGAGT GGGCGTCACC GAACTCGAAG CCCGCGGTGG AACGCTCCCC
CCAGCCTCGC AGCGTTGGGA CCGTATCCTC CAGGCATCAG GGATGAAAAG GGCCAAACCG
TCCCCTACTT CAGCTCAAAC ACCGGATCAG GCGTCTTTGC ATGCATTCGC CGATTCGCTG
GAGCGTGACC TTGATGCGCC TAGCCCAATG CACGAGGGAG ATCAGACAGG GGCAAGCAGC
CGTAAACGGT CCCGATCGGA TCGTGCTGTC ACCGGCCCCT CCGCACAGCA CTCTTTCGAG
GTGCGCGTTC CCGAACAGCG CGATGCGCTG CATTTGCCCC TCAGCTGGAG GGTAAAACGC
CCGCGTACCA GGATCGGGGG CGGCCTCCCG GATCCTGGTA CGCCCATCGC TGCCGACCTG
GCAGCGTCCA GCACCGTGAT GTGGGAACAA GATGCGGCCC CCTTCGCAGG GGCAGCGGAT
GATTTCCCGG CATTCAACGA AGAGGAGCTC GCATGGTTGA TGGAGCTATT GCCTCAGTCA
GGCTCAGTCG GAGGGACGAT CTGA
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| Protein sequence | MQSGLRAADD PPPTVRVAVT AARPPRAKPA PRRRAAQPSD ASPAAQVDLR TLGYSQQQQE
KIKPKVGSTV AQHHEALVGH GFTHAHIVAL SRHPAALGTV AVKYQDMIAA LPEATHEDIV
GVGKQWSGAR ALEALLTVAG ELRGPPLQLD TGQLVKIAKR GGVTAVEAVH ASRNALTGAP
LNLTPAQVVA IASNNGGKQA LETVQRLLPV LCQAHGLTPA QVVAIASHDG GKQALETMQR
LLPVLCQAHG LPPDQVVAIA SNIGGKQALE TVQRLLPVLC QAHGLTPDQV VAIASHGGGK
QALETVQRLL PVLCQAHGLT PDQVVAIASH DGGKQALETV QRLLPVLCQA HGLTPDQVVA
IASNGGGKQA LETVQRLLPV LCQAHGLTPD QVVAIASNGG KQALETVQRL LPVLCQAHGL
TPDQVVAIAS HDGGKQALET VQRLLPVLCQ THGLTPAQVV AIASHDGGKQ ALETVQQLLP
VLCQAHGLTP DQVVAIASNI GGKQALATVQ RLLPVLCQAH GLTPDQVVAI ASNGGGKQAL
ETVQRLLPVL CQAHGLTPDQ VVAIASNGGG KQALETVQRL LPVLCQAHGL TQVQVVAIAS
NIGGKQALET VQRLLPVLCQ AHGLTPAQVV AIASHDGGKQ ALETVQRLLP VLCQAHGLTP
DQVVAIASNG GGKQALETVQ RLLPVLCQAH GLTQEQVVAI ASNNGGKQAL ETVQRLLPVL
CQAHGLTPDQ VVAIASNGGG KQALETVQRL LPVLCQAHGL TPAQVVAIAS NIGGKQALET
VQRLLPVLCQ DHGLTLAQVV AIASNIGGKQ ALETVQRLLP VLCQAHGLTQ DQVVAIASNI
GGKQALETVQ RLLPVLCQDH GLTPDQVVAI ASNIGGKQAL ETVQRLLPVL CQDHGLTLDQ
VVAIASNGGK QALETVQRLL PVLCQDHGLT PDQVVAIASN SGGKQALETV QRLLPVLCQD
HGLTPNQVVA IASNGGKQAL ESIVAQLSRP DPALAALTND HLVALACLGG RPAMDAVKKG
LPHAPELIRR VNRRIGERTS HRVADYAQVV RVLEFFQCHS HPAYAFDEAM TQFGMSRNGL
VQLFRRVGVT ELEARGGTLP PASQRWDRIL QASGMKRAKP SPTSAQTPDQ ASLHAFADSL
ERDLDAPSPM HEGDQTGASS RKRSRSDRAV TGPSAQHSFE VRVPEQRDAL HLPLSWRVKR
PRTRIGGGLP DPGTPIAADL AASSTVMWEQ DAAPFAGAAD DFPAFNEEEL AWLMELLPQS
GSVGGTI
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