Gene PXO_00218 details

Gene Information

• Locus tag: PXO_00218
• Symbol: ccmF
• ID: 6305135
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: -
• Start bp: 1655500
• End bp: 1657488
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642638906
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: YP_001912782
• Protein GI: 188575853
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGCCTG AACTCGGCCA GATCGCCTTG ATCCTGGCGC TATTGTTATC GCTTGCCCAG 
AGCGTGTTGC CGTTGATCGG TGCGTGGCGT GGCAACACCG CGTTGATGGA CATCGCGCGG 
CCTGCGGCGG TGGGCCAGGC GGTGTTCATG TGGATCGCGT TCGGCTTGCT TGCCTGGTCG 
CTGTTGTCGC TGGATTTTTC GGTGGGCTAC GTCGCCGCCA ACGCCAACAT CGCCCTGCCC 
TGGTACTACC GCTTCGCCGC GGTGTGGGGC GCGCACGAAG GCTCGTTGCT GTTGTGGATC 
GCCATCCTGG CCACCTGGAC GGTGCTGTTG GCCGCCTTCA GCCGACATCT GCCGCAGCAC 
TTCGCCGCCC GCGTGCTGGC GGTGCTGGGA CTGATCTCGG TGGGCTTTCT GGCTTTCATC 
CTGCTGACCT CCAATCCATT CGCGCGGCTG TCGCCGATTC CGCTGGATGG CAACGAACTC 
AATCCGGTGC TGCAGGATCC GGGCATGACC TTCCACCCGC CGGTGCTGTA CACCGGCTAT 
GTCGGCTTCT CGGTGGCGTT CGCATTTGCG GTCGCGGCAT TGCTCGGCGG CGAACTGGAA 
CAGGCCTGGG TACGCTGGGC GCGACCGTGG ACCAATGTCG CCTGGGCCTG TCTCACCGCC 
GGCATCGTCG CCGGTAGCTG GTGGGCCTAT GCGGAACTGG GCTGGGGCGG CTGGTGGTTC 
TGGGACCCGG TGGAAAACGC CAGTTTCATG CCATGGCTGG TCGGTACCGC ATTGATCCAC 
ACCCAGGCAG TGACCGAAAA ACGCGGCAGC CTGCGCGCAT GGACCATCCT GCTGTCGATC 
CTGGCGTTCT CGCTGTCGTT GCTGGGCACC TTCCTGGTGC GCTCGGGCGT GCTGACCTCG 
GTGCATGCCT TCGCTGCCGA TCCGCGTCGC GGCTTGTACA TCCTCATTTT TCTGGTCGCG 
GTGGTCGGTG GTTCGTTGCT GTTGTATGCA CTGCGCGCCC CCAAAATTGC CAGCGGCAAA 
CCCTTCGCCG CCGCCTCGCG CGAAACCGGC ATTCTCATCG GCAACCTGTT GCTTACCGTG 
GCCGCGGCCA TGGTGCTGTT GGGCACCTTG TTCCCGCTGA TCGCCGATGC CTTTGGCCTG 
GGTAAGGTGT CGGTAGGGCC GCCCTACTTC GGCCTGCTGT TTCCGCTGTT GATGTTGCCG 
GTGCTGCTGT TGCTGCCGTT CGGTCCGTAC CTGCACTGGG GCAAAGCCGA GGCCGCACCG 
TTGCAGACAC TCGGCACGCG CGCCGGCATC GCCGCGATTG CGTGCGCGCT GGTCGGCAGC 
GTGTTTGCCG ATGGTCAGGC CAAGGCGATC GCCGGCATGG GCGTCGCCGC ATGGGTGGCC 
GCGGGCACCG CGTTGTACGT GGTCAAACGC TGGCGCGAGA TGCCGCACGG GCGACGCTTT 
CCCGCTGAAA TGGCCGGCAT GCTGATCGCG CACGCGGGCG TGGCGGTGTT CGTAGCCGGT 
GTGCTGGTGT CCGAAAGCCT GTCGGTAGAA CGCGATGTGC GGCTATCGCC CGGCGCGAGC 
GCGCAGATTG CCGGCTACAA CTTCCGCTTC GATGGCGTGC AGCTGATGGA TGGGCCGAAC 
TGGAAGGCCG AACAAGGCAG CGTGCAGGTC AGCCGCGACG GCCAGGTGGT CGCGCAATTG 
CATCCGCAAA AACGTCTGTA CAGCAGCGAG CGGATCCAGA CCGAATCGGC GATCGATCCC 
GGCATCACCC GCGACCTGTA TGTCGCGCTC GGCGAGCCCT TGGACGACCA GCACATCGAA 
AACGACTGGA CGCTGCGGCT GTACTACAAA CCCTTCATTC GCTGGATCTG GGCCGGCGGC 
CTGCTGATGA TGCTGGGTGG TCTCGTCAGT GCCTGCGCAC GTCGCTTTCG TGCACCGGCG 
ACTGTCACTA CATCGGCCAC ATCTGCGGCG CATCCGGCTG TCGTCATCGC ACAGGAATCG 
CTCCGGTGA 

 

Protein sequence

MTPELGQIAL ILALLLSLAQ SVLPLIGAWR GNTALMDIAR PAAVGQAVFM WIAFGLLAWS 
LLSLDFSVGY VAANANIALP WYYRFAAVWG AHEGSLLLWI AILATWTVLL AAFSRHLPQH 
FAARVLAVLG LISVGFLAFI LLTSNPFARL SPIPLDGNEL NPVLQDPGMT FHPPVLYTGY 
VGFSVAFAFA VAALLGGELE QAWVRWARPW TNVAWACLTA GIVAGSWWAY AELGWGGWWF 
WDPVENASFM PWLVGTALIH TQAVTEKRGS LRAWTILLSI LAFSLSLLGT FLVRSGVLTS 
VHAFAADPRR GLYILIFLVA VVGGSLLLYA LRAPKIASGK PFAAASRETG ILIGNLLLTV 
AAAMVLLGTL FPLIADAFGL GKVSVGPPYF GLLFPLLMLP VLLLLPFGPY LHWGKAEAAP 
LQTLGTRAGI AAIACALVGS VFADGQAKAI AGMGVAAWVA AGTALYVVKR WREMPHGRRF 
PAEMAGMLIA HAGVAVFVAG VLVSESLSVE RDVRLSPGAS AQIAGYNFRF DGVQLMDGPN 
WKAEQGSVQV SRDGQVVAQL HPQKRLYSSE RIQTESAIDP GITRDLYVAL GEPLDDQHIE 
NDWTLRLYYK PFIRWIWAGG LLMMLGGLVS ACARRFRAPA TVTTSATSAA HPAVVIAQES 
LR