| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00073 |
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| Symbol | rpfD |
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| ID | 6305277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 1785667 |
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| End bp | 1786581 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642639048 |
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| Product | RpfD regulatory protein |
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| Protein accession | YP_001912921 |
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| Protein GI | 188575992 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.133671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATCGA CCGGGCCGCG CCCGCCAATC ATCCACGACC GGGCCGGCCG CGCCGCCATG
CGCTGGGCCG TGGTGATCTG GTCGCTGGTG TTCTACCTGA GTGCACTGGG CAACGTCTGG
ACCGCCTGGC TTGCCGCGCG CCGCGATGGC CAACCCATCG TGGTGTGGCA GGTGCTGAGT
TGGGAACTAA GTAGCGCCAC GGCGGCGCTC ATGCTGTTGC CGGCCGTGGT GTGGCTCTGC
GCACGCTGGC CGCTGCATGC CGATGTCTGG GAACGACGCC TGCCAGCGTA TGTGATCGCT
GCACTGGGCT GGTGGCTGCT GCATGTCGCC GGCATGGTCG TGCTGCGCCT GCTGGTCTAC
GCACTGGCCG GCGCGCATTA CGATTTCGGT GGCTGGCTGC AGTGGGTGTA CGAGCTGTCC
AAGGATCTGC GCACCTTTGC GCTGCTGGTG GCGGTACAGC ATACGCTAGC CTGGTACGCG
CGGCGCCGTC AGGGCGAGGC GCATCTGCTC GCCGCACCTG ACGATGGTCC GCCAGTAGAG
CCGCTGGAGC GCCCGGAGCG ATTTCTGGTG CGCAAGTTGG GACGTGACTT CCTGGTCGCC
ACCGCCGATA TCGAATGGAT CCAGGCCGCG GGCAATGACG TCAACCTGCA TCTGCGCGGT
CACGATTACC CGTTGCGCAG CACCATGGCC GCGATCGAGG CCAAACTGTA CCCGGCCGTG
TTAGTGCACA TCCATCGCAG CTATCTGGTC AATCTGGGCC AAGTGCAGGC GATCGAACCG
GTCGATTCCG GCGATGCGCG CGTGCATCTG CGCGACGCCA CCGTGCTGCC GTGCAGTCGT
AGCCACCTGG CCGGCTTGCG TGCGCATGCG GGGCAGGGCA CCGCTGCGCC CAAGATCGAC
GCACTGGTGG CGTAA
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| Protein sequence | MQSTGPRPPI IHDRAGRAAM RWAVVIWSLV FYLSALGNVW TAWLAARRDG QPIVVWQVLS
WELSSATAAL MLLPAVVWLC ARWPLHADVW ERRLPAYVIA ALGWWLLHVA GMVVLRLLVY
ALAGAHYDFG GWLQWVYELS KDLRTFALLV AVQHTLAWYA RRRQGEAHLL AAPDDGPPVE
PLERPERFLV RKLGRDFLVA TADIEWIQAA GNDVNLHLRG HDYPLRSTMA AIEAKLYPAV
LVHIHRSYLV NLGQVQAIEP VDSGDARVHL RDATVLPCSR SHLAGLRAHA GQGTAAPKID
ALVA
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