| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00064 |
|---|
| Symbol | rpfA |
|---|
| ID | 6305286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 1796891 |
|---|
| End bp | 1799659 |
|---|
| Gene Length | 2769 bp |
|---|
| Protein Length | 922 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642639057 |
|---|
| Product | aconitate hydratase |
|---|
| Protein accession | YP_001912930 |
|---|
| Protein GI | 188576001 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1048] Aconitase A |
|---|
| TIGRFAM ID | [TIGR01341] aconitate hydratase 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.122891 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATT CCTTTTCCAC TCGCACCTCG CTTGAGGTCC ACGGCAAGCG CTACGCCTAC
TACAGCCTGC CGAAGCTGGG CGAACGCTTC GACATCGGCC ACCTGCCCTA TTCGATGAAG
ATCCTGCTGG AGAACCTGCT CCGGCATGAG GACGGCGGTG TCACCGTCGG CAGGGACCAC
ATCGAAGCGG TCGCCAGGTG GGACCCGAAG GCCGAGCCCG ATATCGAAAT CGCCTTCATG
CCGGCGCGCG TGGTGCTGCA GGACTTTACC GGCGTGCCCT GCGTGGTCGA CCTGGCCGCG
ATGCGCGACG CGGTAGTCAC ACTCGGCGGC AACGCCGACC AGATCAACCC GCAGATTCCT
TCCGAACTGG TCATCGACCA TTCGGTGCAG GTGGACGTGT TCGGCAAGCC CGACGCGCTC
GACCTCAACG GCAAGATCGA ATTTCAGCGC AATCAGGAAC GCTACGGCTT TCTGCGCTGG
GGCCAGAAGG CGTTCGAGAA CTTCAAGGTG GTGCCGCCCA ACACCGGCAT CGTGCATCAG
GTGAACCTGG AAAACCTGGC GCGCGTGGTG ATGAGCGCGG ACAAGGACGG CACCTTGCTC
GCCTACCCCG ACACCGTGTT CGGCACCGAC AGCCACACCA CCATGATCAA TGGCATCGGC
GTGCTGGGTT GGGGCGTGGG CGGCATCGAG GCCGAGGCCG CGATGCTGGG CCAGCCCTCC
TCGATGCTGA TTCCGCAGGT GGTCGGCTTC AAGCTCAGCG GCAAGCTACC CGAAGGCGCC
ACCGCCACCG ATCTGGTGCT CACCGTCACC CAGATGCTGC GCAAGGCCGG CGTGGTCGGC
AAGTTCGTCG AGTTCCATGG CGACGGCCTA CAGCACCTGC CGCTGGCCGA CCGCGCCACC
ATCGGCAATA TGGCTCCCGA ATACGGCGCC ACCTGCGGCA TCTTCCCAGT CGACGCAGAA
TCGCTGACCT ACCTGCGCCT GTCCGGCCGC AGCGAGGAGC AGATTGCGCT GGTCGAGGCC
TATGCCAAGG CGCAAGGCCT GTGGCACGAC GCCAACACCC CGCCGGCGCA GTACAGCGCC
ACGCTGGAAC TGGACATGGC CGAGGTCAAG CCGTCGCTGG CCGGCCCCAA GCGCCCGCAG
GACCGCGTGC TGCTGGAAGA CATGCAGTCC AACTACCGCG AAAGCCTCAA GCCGTTTGCC
GACGCACGCA GCAAGAAGCT CACCGACCTC ACGCAGGAAG ACCGCCTGAA GAACGAAGGC
GGCGGCGGCA CTACGGTGGG CGCCAAGGCG TCCCAGGCAG AAAGCGCCAG TGCCAGCGGC
GCCGGTTGGC AGCTGCGCGA TGGCTCGGTG GTCATCGCCG CAATCACGTC GTGCACCAAC
ACCTCCAACC CGGCAGTGAT GTTGGGTGCC GGCCTGCTTG CGCGTCATGC GGCAGCCAAG
GGTCTGAAAG CGCAGCCATG GGTGAAGACC TCGCTCGGGC CGGGCTCGCG CGTGGTCACC
GATTACCTGA GCAAGGCCGG CGTGCTCGCC GACCTGGAAA AACTGGGTTT CTACGTGGTC
GGCTACGGCT GCACCACCTG CATCGGCAAC TCCGGCCCGC TGCCGGACGA CGTGTCTGCG
GCGATTGCCA AGGACGATCT GGTGGTGACC TCGGTGCTGT CGGGCAACCG CAACTTCGAA
GGCCGCGTAC ATCCCGAAGT CAAAATGAAT TACCTGGCCT CGCCGCCGCT GGTGGTGGCC
TACGCCATCG CCGGCACCAC CGATATCGAC CTCACCACCG AGCCGCTGGG CACCGGTAGC
GACGGGCAGC CGGTCTATCT GCGCGACATC TGGCCGAGCA ACAAGGAAAT CGGCGACACC
ATCGCCGCCA CCGTCGGCCC GCAGATGTTC AAGCAGAACT ACGCCGACGT GTTCAAGGGC
GACACGCGCT GGAACACCAT CGCCTCGCCC GACGGCGCGC TGTACGAGTG GGACGCCGCC
TCGACCTACA TCAAGAACCC GCCCTACTTC GACGGCATGA CCATGCAGGT GGGCCATGTG
GACGACGTGC ACGGTGCGCG CATCATGGGC CTGTTCGGCG ACTCGATCAC CACCGACCAC
ATCTCGCCTG CCGGCAACAT CAAAAAGGAC TCGCCGGCAG GCCGTTTCTT GCAGGAACGC
GGCGTGCAAC CGGCCGACTT CAACAGCTAC GGCAGCCGCC GCGGCAACGA CGATGTGATG
GTACGCGGCA CGTTCGCCAA CATCCGCATC AAGAACCTGA TGTTCGGCGG CGAAGAAGGC
GGCAACACGC TGTACTACCC GGCCGACGGC GGCCAGCCGG AAAAGCTGGC GATCTACGAT
GCCGCCATGA AGTACAAGTC CGACGGCGTG CCGCTGGTGG TGCTGGCGGG CAAGGAATAC
GGCACCGGCT CCTCGCGCGA CTGGGCGGCC AAGGGCACCA ACCTGCTCGG CGTCAAGGCC
GTGATCGCCG AGAGCTTCGA GCGCATCCAC CGTTCCAACC TGGTCGGCAT GGGCGTACTG
CCGCTGCAGT TCCTGAACAA CGAGAACGCG CAAAGCCTTG GCCTGGATGG CTCGGAAGTG
CTGGACATCA CCGGCCTGCA GGACGGCGCC AGCCGCCGTG CCACGGTGGA TGCCAAAAAG
TCCGATGGCA GCGTCAAACA GTTCCAGGTC AAGGTGCTGC TGCTGACGCC GAAGGAAGTG
GAGTACTTCA AGCACGGTGG TCTGCTGCAG TACGTGCTGC GTCAACTGGC TGCGCGCAAG
CCAGCCTGA
|
|---|
| Protein sequence | MSDSFSTRTS LEVHGKRYAY YSLPKLGERF DIGHLPYSMK ILLENLLRHE DGGVTVGRDH
IEAVARWDPK AEPDIEIAFM PARVVLQDFT GVPCVVDLAA MRDAVVTLGG NADQINPQIP
SELVIDHSVQ VDVFGKPDAL DLNGKIEFQR NQERYGFLRW GQKAFENFKV VPPNTGIVHQ
VNLENLARVV MSADKDGTLL AYPDTVFGTD SHTTMINGIG VLGWGVGGIE AEAAMLGQPS
SMLIPQVVGF KLSGKLPEGA TATDLVLTVT QMLRKAGVVG KFVEFHGDGL QHLPLADRAT
IGNMAPEYGA TCGIFPVDAE SLTYLRLSGR SEEQIALVEA YAKAQGLWHD ANTPPAQYSA
TLELDMAEVK PSLAGPKRPQ DRVLLEDMQS NYRESLKPFA DARSKKLTDL TQEDRLKNEG
GGGTTVGAKA SQAESASASG AGWQLRDGSV VIAAITSCTN TSNPAVMLGA GLLARHAAAK
GLKAQPWVKT SLGPGSRVVT DYLSKAGVLA DLEKLGFYVV GYGCTTCIGN SGPLPDDVSA
AIAKDDLVVT SVLSGNRNFE GRVHPEVKMN YLASPPLVVA YAIAGTTDID LTTEPLGTGS
DGQPVYLRDI WPSNKEIGDT IAATVGPQMF KQNYADVFKG DTRWNTIASP DGALYEWDAA
STYIKNPPYF DGMTMQVGHV DDVHGARIMG LFGDSITTDH ISPAGNIKKD SPAGRFLQER
GVQPADFNSY GSRRGNDDVM VRGTFANIRI KNLMFGGEEG GNTLYYPADG GQPEKLAIYD
AAMKYKSDGV PLVVLAGKEY GTGSSRDWAA KGTNLLGVKA VIAESFERIH RSNLVGMGVL
PLQFLNNENA QSLGLDGSEV LDITGLQDGA SRRATVDAKK SDGSVKQFQV KVLLLTPKEV
EYFKHGGLLQ YVLRQLAARK PA
|
|---|
| |