| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00058 |
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| Symbol | pdeA |
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| ID | 6305292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 1804944 |
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| End bp | 1807187 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642639063 |
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| Product | C-di-GMP phosphodiesterase A |
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| Protein accession | YP_001912936 |
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| Protein GI | 188576007 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0145768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCATGCGG ACACGCCAAG CCACGAGCTG GTCAGACCCG GCCCGGTCAC CGCTGGCATG
GCCAAGGCCG GCGAACAGCC TGAGCAACGC CGTTCGCGCC TGTTGGCCGA AGCACTGGAT
GGCAGCAGCA GCGCCATTCT CATCTGCGAT CTGCAATCGC GCCTGCTGTA TGCCAACGAC
GGCTTCCAGC GCATGTTCGG CTACACCGAA GCCGAGCTGG TCGGTCAGCG TCCATCGGAT
GTCTTGACCC GCGCGCAAAG CGACCAAAGC GAAGTCGCCC GTGTGCGCGA TCGCGCCGAT
GCCTTGCAGC ACACCCGCGC CGAACTGCTG GTGTACCGCA AGGACGGCAC GCCGCTATGG
ATCTCGCTCA ATTTCAACCC AATCTACGAC GCCGACCACA CCCCCTTGCA TTACGTGGCG
GTGCTGACCG ACATCACCGA CACCAAGATG CACGAGGTAT TGCAGCACCG CGTGCTGGAA
GCCTTGCTGC AGGAACGCCC GTTGATCGAG GTGATGACGC TGATTTGCAC CGAGGTCGAA
CGCATTGCAC CGGACGTGCT GGCCGCGGTG ACGAGTGCGG ACAATCAAGG CCGCCTGCAT
TCGCTGGCGG CACCTAGCCT GCCACCCGAG TACGCCGATG CGGTCAATGG TTTGAAGATC
GGCCCGGGCG CAGGCGCCTG CGGCACCGCG GCCTGGCGAG GTCGCGCGGT GATGGTGGAA
GACATCGCGA CCGACCCGCT GTTCGAACCA TGTCGCGAAA CGATGTTGCG CTGGGACCTG
CACGCCTGCT GGAGTACGCC GATCCGCTCC AACAGCGCGC GCGTGCTCGG CACCTTCGCG
CTGTATTACC GCAAGCCGCA ACATGCCAAT GCCTGGCATA TGCGGCTGAC CGATTTGTGC
CAGCAACTGT GCACGTTGGC GCTGGAGCGC GAGCAGATCC GCCAGCGCGT GCATCAACTG
GCGTTCTACG ACACGCTCAC CGGTTTGCCG AATCGCATCA TGTTCAGCGC GCGTGCCGAG
CAGGCGCTGA CGCAGGCCGA ATACGCCGGC GAACCGGCAG CGTTGGTGTT CATCAACATC
GATCGTTTCA AACTCATCAA CGATAGCCAG GGTCATGCCG CAGGCGACGG TCTGTTGCGC
GATATCGCCC TACGCATCAA CGATCAACTC ACTGCCACAG CGATGCTGGC GCGCCTGTCA
GGCGACGAAT TCGCGCTTGC GCTGCCGCAA TGCAGCGCAG AACAGGCCAG TGCCGTCGCC
GAGCGTGTGT TGGTCAGCAT CGCCAACCCG TTGCCGGTTG GCCATATGAC CGTGCATCCC
TCGGCCAGTA TCGGCGTGGC GATGTTTCCG GAGGACGGCC GCGAGATCAA CATCCTGTTG
CGCCACGCCG ATCTGGCGAT GAATCGCGCC AAGAAGGAAG GCGGCGGGCG TTTCCGCTTC
TTCAGCGCCG ACATGAACCG CATGGCGCAA GAACGCGTTG CGCTGGAAGC GGAGCTGCGC
CAGGCCATCG GCCGCGATCA GCTGCAACTA CATTACCAGC CGCAAATACA CAGCGCCGCG
CCGCACACGC TGTATGGCGT GGAAGCGCTA CTGCGCTGGA ATCATCCGCA ATTGGGCGCG
GTGTCGCCGG CACAATTCTT ACAGGTGGCC GAAGAGCAAG GCATGATGCC GCAGATCAAT
GCGTGGGTAC TGCGCAGCGC CTGCCAGCAG GTCGCCGACT GGCGCCAGCG TGGCGTGCCG
GTGGCACGTG TCTCGGTGAA TCTGTCGGCA AGCGGTTTCG AAAGTCCACG CATGCTGTCG
GATTTGCTCC AACTTATCGC CGACATGGGC GTAAAGCCCT CCGACCTGAC CCTGGAACTG
ACCGAAAGCG TGATGCTGTC CGGGCAACCG GGCGTGCTGG AAAACCTGCA CGCCATTCGC
GAAGCCGGTA TCTCGCTGTC GCTGGACGAT TTCGGCACCG GCTATTCCAG TCTTAGCCAT
TTGCATCGCT TGCCGATCGA CGAACTCAAG CTGGACATGA GCTTCGTCCG CGATATCGAA
CACAGCGAAG ACGCGCGTGC ACTCATCACC TCGGTGCTGC GCATCGGCGA GCACCTGCGC
AAGCACGTGG TCGCCGAAGG CGTGGAAAAC GAAGCACAAC GCCTGTTTCT CGCCGACCTG
GGCTGCGAGG TCTTACAAGG CTACCTGTTC TCGCGACCGC TGCCGGCCGC AGCGCTGGAA
GCTTGGTTGG GCGCGCAGCC TTAG
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| Protein sequence | MHADTPSHEL VRPGPVTAGM AKAGEQPEQR RSRLLAEALD GSSSAILICD LQSRLLYAND
GFQRMFGYTE AELVGQRPSD VLTRAQSDQS EVARVRDRAD ALQHTRAELL VYRKDGTPLW
ISLNFNPIYD ADHTPLHYVA VLTDITDTKM HEVLQHRVLE ALLQERPLIE VMTLICTEVE
RIAPDVLAAV TSADNQGRLH SLAAPSLPPE YADAVNGLKI GPGAGACGTA AWRGRAVMVE
DIATDPLFEP CRETMLRWDL HACWSTPIRS NSARVLGTFA LYYRKPQHAN AWHMRLTDLC
QQLCTLALER EQIRQRVHQL AFYDTLTGLP NRIMFSARAE QALTQAEYAG EPAALVFINI
DRFKLINDSQ GHAAGDGLLR DIALRINDQL TATAMLARLS GDEFALALPQ CSAEQASAVA
ERVLVSIANP LPVGHMTVHP SASIGVAMFP EDGREINILL RHADLAMNRA KKEGGGRFRF
FSADMNRMAQ ERVALEAELR QAIGRDQLQL HYQPQIHSAA PHTLYGVEAL LRWNHPQLGA
VSPAQFLQVA EEQGMMPQIN AWVLRSACQQ VADWRQRGVP VARVSVNLSA SGFESPRMLS
DLLQLIADMG VKPSDLTLEL TESVMLSGQP GVLENLHAIR EAGISLSLDD FGTGYSSLSH
LHRLPIDELK LDMSFVRDIE HSEDARALIT SVLRIGEHLR KHVVAEGVEN EAQRLFLADL
GCEVLQGYLF SRPLPAAALE AWLGAQP
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